Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 32889 | 0.68 | 0.611507 |
Target: 5'- uGGUACaccgcccaauuuuCGGGGGugUCCUCGGcgguGCCGGAc -3' miRNA: 3'- -CCAUG-------------GUCCCC--AGGGGCUuu--UGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 14207 | 0.68 | 0.601951 |
Target: 5'- --gGCCAGcGGcgcggucggccuGUCCCCGGAGgccuucacGCCGGAc -3' miRNA: 3'- ccaUGGUC-CC------------CAGGGGCUUU--------UGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 37161 | 0.68 | 0.601951 |
Target: 5'- uGGUGgguUCGGGGGccgccUCCCCGAucACCauGGAc -3' miRNA: 3'- -CCAU---GGUCCCC-----AGGGGCUuuUGG--CCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 65469 | 0.69 | 0.559799 |
Target: 5'- cGGUACCAGG----CCCGGcAGGCCGGGu -3' miRNA: 3'- -CCAUGGUCCccagGGGCU-UUUGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 2853 | 0.69 | 0.539019 |
Target: 5'- uGG-ACCAcGGGUUCCUGGucgcGCCGGAc -3' miRNA: 3'- -CCaUGGUcCCCAGGGGCUuu--UGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 5312 | 0.7 | 0.518508 |
Target: 5'- uGUACCAGGGuUCCCCGAcGAAUCc-- -3' miRNA: 3'- cCAUGGUCCCcAGGGGCU-UUUGGccu -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 51306 | 0.7 | 0.508369 |
Target: 5'- cGGUGCCAGGaacUCCCGGucACCGGc -3' miRNA: 3'- -CCAUGGUCCccaGGGGCUuuUGGCCu -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 37587 | 0.7 | 0.508369 |
Target: 5'- --cACCAGGGuGUCCCgGuagguGCCGGu -3' miRNA: 3'- ccaUGGUCCC-CAGGGgCuuu--UGGCCu -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 65445 | 0.7 | 0.508369 |
Target: 5'- aGUACCAGGGGagaaCGAAAACCGa- -3' miRNA: 3'- cCAUGGUCCCCagggGCUUUUGGCcu -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 52425 | 0.7 | 0.508369 |
Target: 5'- cGGUccagGCCGGGGGUCUcgaugucggCCGcc-ACCGGGa -3' miRNA: 3'- -CCA----UGGUCCCCAGG---------GGCuuuUGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 35363 | 0.7 | 0.475537 |
Target: 5'- cGGUGCCAgcuguGGGcGUUCCCGcAAcagggcaaccugguGGCCGGAu -3' miRNA: 3'- -CCAUGGU-----CCC-CAGGGGC-UU--------------UUGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 20762 | 0.71 | 0.449479 |
Target: 5'- cGGUGCCguccacaccggAGGcGGUggCCCCGAAGccACCGGc -3' miRNA: 3'- -CCAUGG-----------UCC-CCA--GGGGCUUU--UGGCCu -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 39735 | 0.74 | 0.319987 |
Target: 5'- --cACCAGGGuGUCCaCCGuggucauGAGACCGGGu -3' miRNA: 3'- ccaUGGUCCC-CAGG-GGC-------UUUUGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 63896 | 0.75 | 0.270841 |
Target: 5'- cGGUGCCAGGuGGUCCa-GGu-ACCGGGu -3' miRNA: 3'- -CCAUGGUCC-CCAGGggCUuuUGGCCU- -5' |
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19120 | 3' | -56.4 | NC_004684.1 | + | 36 | 1.11 | 0.000864 |
Target: 5'- cGGUACCAGGGGUCCCCGAAAACCGGAu -3' miRNA: 3'- -CCAUGGUCCCCAGGGGCUUUUGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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