miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19120 5' -48.7 NC_004684.1 + 65128 0.66 0.987014
Target:  5'- aGGUCCagggUGUUgGUgGGGGuGACGAUGg -3'
miRNA:   3'- -CCGGG----AUAAaCAgCUCCuCUGUUACg -5'
19120 5' -48.7 NC_004684.1 + 56301 0.66 0.987014
Target:  5'- cGGCCCUGgcgcgccggGaCGuGGAGACcgcgcUGCg -3'
miRNA:   3'- -CCGGGAUaaa------CaGCuCCUCUGuu---ACG- -5'
19120 5' -48.7 NC_004684.1 + 33503 0.66 0.987014
Target:  5'- cGGCCCUGUacucgCGGGcGGugGcgGCu -3'
miRNA:   3'- -CCGGGAUAaaca-GCUCcUCugUuaCG- -5'
19120 5' -48.7 NC_004684.1 + 32897 0.66 0.986839
Target:  5'- cGCCCaAUUU-UCGGGGGuguccucGGCGGUGCc -3'
miRNA:   3'- cCGGGaUAAAcAGCUCCU-------CUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 27808 0.66 0.983166
Target:  5'- uGGCCCgagcagcUGUUGAGGGcGGCcugauccguccGGUGCu -3'
miRNA:   3'- -CCGGGauaa---ACAGCUCCU-CUG-----------UUACG- -5'
19120 5' -48.7 NC_004684.1 + 8460 0.66 0.978515
Target:  5'- aGGCCUggcugUUGUCcccGGAGGCGggGUg -3'
miRNA:   3'- -CCGGGaua--AACAGcu-CCUCUGUuaCG- -5'
19120 5' -48.7 NC_004684.1 + 43430 0.67 0.966468
Target:  5'- aGGCCCggcgagGcCGAGGu--CGGUGCg -3'
miRNA:   3'- -CCGGGauaaa-CaGCUCCucuGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 42954 0.67 0.962831
Target:  5'- uGGCUgCUGUggUUGUggcCGGGGAGACAA-GUa -3'
miRNA:   3'- -CCGG-GAUA--AACA---GCUCCUCUGUUaCG- -5'
19120 5' -48.7 NC_004684.1 + 66930 0.67 0.962831
Target:  5'- uGGCCCgg-UUGUCcacGGccACGAUGCg -3'
miRNA:   3'- -CCGGGauaAACAGcu-CCucUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 26057 0.68 0.954753
Target:  5'- uGGCCCggcc-GUCGGcGGucGCGGUGCc -3'
miRNA:   3'- -CCGGGauaaaCAGCU-CCucUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 67332 0.68 0.954753
Target:  5'- aGGCCa----UGUCGAGcagcuuaGGACAAUGCc -3'
miRNA:   3'- -CCGGgauaaACAGCUCc------UCUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 56883 0.68 0.950299
Target:  5'- uGGCCCcgcaccUUGgCGAGGAGGCcaagGCc -3'
miRNA:   3'- -CCGGGaua---AACaGCUCCUCUGuua-CG- -5'
19120 5' -48.7 NC_004684.1 + 55568 0.68 0.945562
Target:  5'- uGGCCCggug-GcCGGGGguccaggcaccaAGGCGGUGCu -3'
miRNA:   3'- -CCGGGauaaaCaGCUCC------------UCUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 47635 0.7 0.911042
Target:  5'- cGGCCU----UGUCGuGGAcGGcCAGUGCg -3'
miRNA:   3'- -CCGGGauaaACAGCuCCU-CU-GUUACG- -5'
19120 5' -48.7 NC_004684.1 + 60857 0.7 0.904269
Target:  5'- cGGCggcga-UGUCGgccGGGAGGCGAUGCg -3'
miRNA:   3'- -CCGggauaaACAGC---UCCUCUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 51240 0.72 0.806289
Target:  5'- cGGCCUUG-UUGUCGAGGuucuugguguugauGcCGAUGCu -3'
miRNA:   3'- -CCGGGAUaAACAGCUCCu-------------CuGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 33445 0.73 0.771953
Target:  5'- gGGCcgauCCUAUcUGUCGAGGAuGGCGgucacuggaAUGCg -3'
miRNA:   3'- -CCG----GGAUAaACAGCUCCU-CUGU---------UACG- -5'
19120 5' -48.7 NC_004684.1 + 9938 0.73 0.7509
Target:  5'- cGGCa--GUUUGUCG-GGAGACA-UGCg -3'
miRNA:   3'- -CCGggaUAAACAGCuCCUCUGUuACG- -5'
19120 5' -48.7 NC_004684.1 + 63699 0.74 0.707357
Target:  5'- uGGUUgUggUUGUCGugcGGGAGGCGGUGCc -3'
miRNA:   3'- -CCGGgAuaAACAGC---UCCUCUGUUACG- -5'
19120 5' -48.7 NC_004684.1 + 18926 0.75 0.628608
Target:  5'- uGGCgCUGUcgGUCGAGGAGAacucgGCc -3'
miRNA:   3'- -CCGgGAUAaaCAGCUCCUCUguua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.