Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19120 | 5' | -48.7 | NC_004684.1 | + | 65128 | 0.66 | 0.987014 |
Target: 5'- aGGUCCagggUGUUgGUgGGGGuGACGAUGg -3' miRNA: 3'- -CCGGG----AUAAaCAgCUCCuCUGUUACg -5' |
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19120 | 5' | -48.7 | NC_004684.1 | + | 66930 | 0.67 | 0.962831 |
Target: 5'- uGGCCCgg-UUGUCcacGGccACGAUGCg -3' miRNA: 3'- -CCGGGauaAACAGcu-CCucUGUUACG- -5' |
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19120 | 5' | -48.7 | NC_004684.1 | + | 67332 | 0.68 | 0.954753 |
Target: 5'- aGGCCa----UGUCGAGcagcuuaGGACAAUGCc -3' miRNA: 3'- -CCGGgauaaACAGCUCc------UCUGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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