Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19120 | 5' | -48.7 | NC_004684.1 | + | 9938 | 0.73 | 0.7509 |
Target: 5'- cGGCa--GUUUGUCG-GGAGACA-UGCg -3' miRNA: 3'- -CCGggaUAAACAGCuCCUCUGUuACG- -5' |
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19120 | 5' | -48.7 | NC_004684.1 | + | 8460 | 0.66 | 0.978515 |
Target: 5'- aGGCCUggcugUUGUCcccGGAGGCGggGUg -3' miRNA: 3'- -CCGGGaua--AACAGcu-CCUCUGUuaCG- -5' |
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19120 | 5' | -48.7 | NC_004684.1 | + | 71 | 1.15 | 0.002674 |
Target: 5'- aGGCCCUAUUUGUCGAGGAGACAAUGCc -3' miRNA: 3'- -CCGGGAUAAACAGCUCCUCUGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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