miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 773 0.66 0.512399
Target:  5'- -aCACCGCCGAGGcaccgugaaugaUGGCCCUcaccuGCAc- -3'
miRNA:   3'- ugGUGGUGGUUCC------------ACCGGGAc----CGUug -5'
19121 3' -59.1 NC_004684.1 + 42565 0.66 0.512399
Target:  5'- cGCUGCCGCCcuGuGUGGUguCCUGcGCGAUg -3'
miRNA:   3'- -UGGUGGUGGuuC-CACCG--GGAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 19980 0.66 0.512399
Target:  5'- cACCACCuCCAGcaggcaccGGUGGUCCUG-UGACc -3'
miRNA:   3'- -UGGUGGuGGUU--------CCACCGGGACcGUUG- -5'
19121 3' -59.1 NC_004684.1 + 12270 0.66 0.512399
Target:  5'- gACCAUCAUCGAGGcccGUgCUGcGCAGCg -3'
miRNA:   3'- -UGGUGGUGGUUCCac-CGgGAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 31738 0.66 0.512399
Target:  5'- cACCGCCGCCGAc--GGCCCUGuacguCGGCc -3'
miRNA:   3'- -UGGUGGUGGUUccaCCGGGACc----GUUG- -5'
19121 3' -59.1 NC_004684.1 + 49411 0.66 0.512399
Target:  5'- cGCCACCACCuggagcuuGGacaUGGUCUUGGUg-- -3'
miRNA:   3'- -UGGUGGUGGuu------CC---ACCGGGACCGuug -5'
19121 3' -59.1 NC_004684.1 + 54210 0.66 0.512399
Target:  5'- gGCCugCucgggGCCGAGGUcGGCCa--GCAGCu -3'
miRNA:   3'- -UGGugG-----UGGUUCCA-CCGGgacCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 40203 0.66 0.506276
Target:  5'- cACCGCCGCCAAagaucgccGUGGCCaggucgccgccguagCUGGUGAUc -3'
miRNA:   3'- -UGGUGGUGGUUc-------CACCGG---------------GACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 24113 0.66 0.502211
Target:  5'- -gCAUCGCCAAGGacgUGGUgCgcGGCGACa -3'
miRNA:   3'- ugGUGGUGGUUCC---ACCGgGa-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 10557 0.66 0.502211
Target:  5'- cACCAgCugCGccAGGUGGUCgUGGuCGAUg -3'
miRNA:   3'- -UGGUgGugGU--UCCACCGGgACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 57993 0.66 0.502211
Target:  5'- -aCAUgACCAAGGUGuG-CCUGGCGuACu -3'
miRNA:   3'- ugGUGgUGGUUCCAC-CgGGACCGU-UG- -5'
19121 3' -59.1 NC_004684.1 + 19935 0.66 0.502211
Target:  5'- cACCgGCCuaACCGAGGUGGauaCCUgcuGGCcGCg -3'
miRNA:   3'- -UGG-UGG--UGGUUCCACCg--GGA---CCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 41928 0.66 0.502211
Target:  5'- gGCCGugACCAAGGcGGUCaacGGCGGCa -3'
miRNA:   3'- -UGGUggUGGUUCCaCCGGga-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 19329 0.66 0.502211
Target:  5'- cGCCGCCGCCGuggccgagcGGGaGGCgCUGauccaGCGGCg -3'
miRNA:   3'- -UGGUGGUGGU---------UCCaCCGgGAC-----CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 64515 0.66 0.499171
Target:  5'- uGCCACCAggcaccgaugacgcCCAGcggcucGGcGGCCUUGGUGACc -3'
miRNA:   3'- -UGGUGGU--------------GGUU------CCaCCGGGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 9875 0.67 0.492112
Target:  5'- gGCCACCGCCucGGgauccGGCgCaGGCAccuGCg -3'
miRNA:   3'- -UGGUGGUGGuuCCa----CCGgGaCCGU---UG- -5'
19121 3' -59.1 NC_004684.1 + 31159 0.67 0.492112
Target:  5'- gGCCA-CGCCAGcggucucggcGGUGGCCacgCUGcGCAGCu -3'
miRNA:   3'- -UGGUgGUGGUU----------CCACCGG---GAC-CGUUG- -5'
19121 3' -59.1 NC_004684.1 + 22334 0.67 0.492112
Target:  5'- cCCGCCACCc-GGUacaGGCggUGGCGGCg -3'
miRNA:   3'- uGGUGGUGGuuCCA---CCGggACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 23327 0.67 0.492112
Target:  5'- cACCACCGgCGAGcUGuaCCUgGGCGACc -3'
miRNA:   3'- -UGGUGGUgGUUCcACcgGGA-CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 5165 0.67 0.491108
Target:  5'- cGCUACC-CCGaugucgAGGUGGCgCUGGUuggccagGACg -3'
miRNA:   3'- -UGGUGGuGGU------UCCACCGgGACCG-------UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.