Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19121 | 5' | -56 | NC_004684.1 | + | 46617 | 0.66 | 0.714577 |
Target: 5'- -gGCUuCGGGGccaccGCCUCCGGUGUGGa- -3' miRNA: 3'- gaUGAuGUUCU-----UGGGGGCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 47361 | 0.68 | 0.567707 |
Target: 5'- gCUGaugGCGGGGucuucaggcaccacgGCCUCCGGUGCGGUc -3' miRNA: 3'- -GAUga-UGUUCU---------------UGGGGGCCGCGCCAu -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 49643 | 0.66 | 0.735565 |
Target: 5'- -gGCUcCAGGAGCaccgaCCaCGGCGUGGa- -3' miRNA: 3'- gaUGAuGUUCUUGg----GG-GCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 55400 | 0.67 | 0.638092 |
Target: 5'- --cCUGCGGGGucaugccgucgguGCCgCCGGuCGCGGUGu -3' miRNA: 3'- gauGAUGUUCU-------------UGGgGGCC-GCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 57209 | 0.67 | 0.63918 |
Target: 5'- -cGCUggGCGgucuGGAACuCCUCGaGCGCGGUGg -3' miRNA: 3'- gaUGA--UGU----UCUUG-GGGGC-CGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 58203 | 0.69 | 0.531604 |
Target: 5'- -cACUGCGcccAACCuUCCGGCGUGGUGa -3' miRNA: 3'- gaUGAUGUuc-UUGG-GGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 61306 | 0.67 | 0.627215 |
Target: 5'- --uUUACGAGGccGCCCCCGGCaucggcuaccagcGCGGc- -3' miRNA: 3'- gauGAUGUUCU--UGGGGGCCG-------------CGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 64341 | 0.66 | 0.69327 |
Target: 5'- -aGCUugGucacguccuuGAACCCggUCGGCGCGGUc -3' miRNA: 3'- gaUGAugUu---------CUUGGG--GGCCGCGCCAu -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 66756 | 0.66 | 0.725116 |
Target: 5'- gUACaGCAccccGGcgaCCUCGGCGCGGUAc -3' miRNA: 3'- gAUGaUGU----UCuugGGGGCCGCGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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