Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19121 | 5' | -56 | NC_004684.1 | + | 224 | 1.07 | 0.001395 |
Target: 5'- cCUACUACAAGAACCCCCGGCGCGGUAa -3' miRNA: 3'- -GAUGAUGUUCUUGGGGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 49643 | 0.66 | 0.735565 |
Target: 5'- -gGCUcCAGGAGCaccgaCCaCGGCGUGGa- -3' miRNA: 3'- gaUGAuGUUCUUGg----GG-GCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 66756 | 0.66 | 0.725116 |
Target: 5'- gUACaGCAccccGGcgaCCUCGGCGCGGUAc -3' miRNA: 3'- gAUGaUGU----UCuugGGGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 64341 | 0.66 | 0.69327 |
Target: 5'- -aGCUugGucacguccuuGAACCCggUCGGCGCGGUc -3' miRNA: 3'- gaUGAugUu---------CUUGGG--GGCCGCGCCAu -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 34056 | 0.67 | 0.66957 |
Target: 5'- uCUACUuCAAGGGgcacaccggcgaCCCUGGCGCGGc- -3' miRNA: 3'- -GAUGAuGUUCUUg-----------GGGGCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 32589 | 0.67 | 0.66957 |
Target: 5'- uCUACaaggugUACAAGAACggcguggccguaCCCGGUGCGGa- -3' miRNA: 3'- -GAUG------AUGUUCUUGg-----------GGGCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 11506 | 0.67 | 0.65005 |
Target: 5'- --cCUGCugGGACUCCCGGCaccgcuCGGUGg -3' miRNA: 3'- gauGAUGuuCUUGGGGGCCGc-----GCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 28270 | 0.67 | 0.639179 |
Target: 5'- cCUGgUGCGcGAGgCCgCUGGCGUGGUGc -3' miRNA: 3'- -GAUgAUGUuCUUgGG-GGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 41635 | 0.67 | 0.628302 |
Target: 5'- aUACcaggAgGAGAucGCCUCCGGUGCGGc- -3' miRNA: 3'- gAUGa---UgUUCU--UGGGGGCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 522 | 0.68 | 0.563423 |
Target: 5'- gCUGCUGCAAG-GCCuggaCCCGGCGaaaGGc- -3' miRNA: 3'- -GAUGAUGUUCuUGG----GGGCCGCg--CCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 17730 | 0.7 | 0.500457 |
Target: 5'- -aACUGCGGucGCCCggaauCCGGCGCGGc- -3' miRNA: 3'- gaUGAUGUUcuUGGG-----GGCCGCGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 24034 | 0.72 | 0.359451 |
Target: 5'- ----gGCAAGGugC-CCGGCGCGGUGa -3' miRNA: 3'- gaugaUGUUCUugGgGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 25548 | 0.77 | 0.176867 |
Target: 5'- gUGCU-CAAGAG-CCUCGGCGCGGUGg -3' miRNA: 3'- gAUGAuGUUCUUgGGGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 61306 | 0.67 | 0.627215 |
Target: 5'- --uUUACGAGGccGCCCCCGGCaucggcuaccagcGCGGc- -3' miRNA: 3'- gauGAUGUUCU--UGGGGGCCG-------------CGCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 28422 | 0.68 | 0.606568 |
Target: 5'- -cGC-GCGcGAACaCCUCGGUGCGGUGc -3' miRNA: 3'- gaUGaUGUuCUUG-GGGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 11818 | 0.68 | 0.606568 |
Target: 5'- uUGgUGCcuGGACCCCCGGCcacCGGg- -3' miRNA: 3'- gAUgAUGuuCUUGGGGGCCGc--GCCau -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 33696 | 0.68 | 0.595728 |
Target: 5'- gCUGCcgcugGCGAGggUgUCCaGCGCGGUGg -3' miRNA: 3'- -GAUGa----UGUUCuuGgGGGcCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 47361 | 0.68 | 0.567707 |
Target: 5'- gCUGaugGCGGGGucuucaggcaccacgGCCUCCGGUGCGGUc -3' miRNA: 3'- -GAUga-UGUUCU---------------UGGGGGCCGCGCCAu -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 58203 | 0.69 | 0.531604 |
Target: 5'- -cACUGCGcccAACCuUCCGGCGUGGUGa -3' miRNA: 3'- gaUGAUGUuc-UUGG-GGGCCGCGCCAU- -5' |
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19121 | 5' | -56 | NC_004684.1 | + | 6066 | 0.66 | 0.725117 |
Target: 5'- cCUACgccgcCGAGGGCggcggCCCGGCgGCGGUGc -3' miRNA: 3'- -GAUGau---GUUCUUGg----GGGCCG-CGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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