Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 33696 | 0.68 | 0.595728 |
|
Target: 5'- gCUGCcgcugGCGAGggUgUCCaGCGCGGUGg -3' miRNA: 3'- -GAUGa----UGUUCuuGgGGGcCGCGCCAU- -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 47361 | 0.68 | 0.567707 |
|
Target: 5'- gCUGaugGCGGGGucuucaggcaccacgGCCUCCGGUGCGGUc -3' miRNA: 3'- -GAUga-UGUUCU---------------UGGGGGCCGCGCCAu -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 522 | 0.68 | 0.563423 |
|
Target: 5'- gCUGCUGCAAG-GCCuggaCCCGGCGaaaGGc- -3' miRNA: 3'- -GAUGAUGUUCuUGG----GGGCCGCg--CCau -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 58203 | 0.69 | 0.531604 |
|
Target: 5'- -cACUGCGcccAACCuUCCGGCGUGGUGa -3' miRNA: 3'- gaUGAUGUuc-UUGG-GGGCCGCGCCAU- -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 17730 | 0.7 | 0.500457 |
|
Target: 5'- -aACUGCGGucGCCCggaauCCGGCGCGGc- -3' miRNA: 3'- gaUGAUGUUcuUGGG-----GGCCGCGCCau -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 24034 | 0.72 | 0.359451 |
|
Target: 5'- ----gGCAAGGugC-CCGGCGCGGUGa -3' miRNA: 3'- gaugaUGUUCUugGgGGCCGCGCCAU- -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 13138 | 0.76 | 0.224291 |
|
Target: 5'- -gGCUG-AGGAGCUguCCCGGCGCGGUGc -3' miRNA: 3'- gaUGAUgUUCUUGG--GGGCCGCGCCAU- -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 25548 | 0.77 | 0.176867 |
|
Target: 5'- gUGCU-CAAGAG-CCUCGGCGCGGUGg -3' miRNA: 3'- gAUGAuGUUCUUgGGGGCCGCGCCAU- -5' |
|||||||
| 19121 | 5' | -56 | NC_004684.1 | + | 224 | 1.07 | 0.001395 |
|
Target: 5'- cCUACUACAAGAACCCCCGGCGCGGUAa -3' miRNA: 3'- -GAUGAUGUUCUUGGGGGCCGCGCCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home