miRNA display CGI


Results 61 - 80 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 18838 0.67 0.620542
Target:  5'- gGCGCGCAggccgaggUGUGGCaggagGUcGGCAACUa -3'
miRNA:   3'- aCGCGCGUa-------GCACCGg----CAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 61031 0.67 0.631234
Target:  5'- cGCGCaggcCAUCGccGCCGacaUGGACAACg -3'
miRNA:   3'- aCGCGc---GUAGCacCGGC---ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 21015 0.68 0.536033
Target:  5'- aGCGacaucgGCAUCGUgauGGCCGagcacGACGACCa -3'
miRNA:   3'- aCGCg-----CGUAGCA---CCGGCac---CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 11404 0.68 0.556879
Target:  5'- cGCGCGCGaUGUGuucGCCGUaGAC-GCCg -3'
miRNA:   3'- aCGCGCGUaGCAC---CGGCAcCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 10563 0.68 0.567391
Target:  5'- cUGCGC-CAg-GUGGUCGUGGuCGaugGCCa -3'
miRNA:   3'- -ACGCGcGUagCACCGGCACCuGU---UGG- -5'
19122 3' -57.1 NC_004684.1 + 19065 0.68 0.577953
Target:  5'- aGCGCGCucaaCG-GuGCCcUGGACAGCg -3'
miRNA:   3'- aCGCGCGua--GCaC-CGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 2956 0.68 0.536033
Target:  5'- gGCGCGCAcaucgagaccaUCG-GuGCCcUGGACGGCg -3'
miRNA:   3'- aCGCGCGU-----------AGCaC-CGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 5616 0.68 0.536033
Target:  5'- gGCGCGCAUgGU-GCUGgagcUGGAC-GCCu -3'
miRNA:   3'- aCGCGCGUAgCAcCGGC----ACCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 54590 0.68 0.536033
Target:  5'- cGgGCGCGUCGUcGGCg--GGGguGCCg -3'
miRNA:   3'- aCgCGCGUAGCA-CCGgcaCCUguUGG- -5'
19122 3' -57.1 NC_004684.1 + 54298 0.68 0.576895
Target:  5'- gUGCGCGCAUCGgcccccuUGGCgGcuGACAuuCCg -3'
miRNA:   3'- -ACGCGCGUAGC-------ACCGgCacCUGUu-GG- -5'
19122 3' -57.1 NC_004684.1 + 58101 0.68 0.577953
Target:  5'- aGCGCGCcgagCaUGGCCG-GGuccgcgaacaacGCGACCg -3'
miRNA:   3'- aCGCGCGua--GcACCGGCaCC------------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 6216 0.68 0.546425
Target:  5'- gGCGCG-AUCucGGCCagcUGGGCGGCCa -3'
miRNA:   3'- aCGCGCgUAGcaCCGGc--ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 10599 0.68 0.545382
Target:  5'- gGCGCGCGagGUGcgcaacugccguuGCCGUauGGGCGugCu -3'
miRNA:   3'- aCGCGCGUagCAC-------------CGGCA--CCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 6524 0.68 0.577953
Target:  5'- gGUGCGCAUCGcgcucccGGCCGacaucgccgccgUGGACAu-- -3'
miRNA:   3'- aCGCGCGUAGCa------CCGGC------------ACCUGUugg -5'
19122 3' -57.1 NC_004684.1 + 31578 0.68 0.576894
Target:  5'- gGCG-GCGUCGUGaaugaccaccgucGCCGgGGACugcGCCa -3'
miRNA:   3'- aCGCgCGUAGCAC-------------CGGCaCCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 55585 0.68 0.561078
Target:  5'- gGCGCGC-UCGcgcccuucuccacggUGGCC-UGGuCGGCCc -3'
miRNA:   3'- aCGCGCGuAGC---------------ACCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55743 0.68 0.556879
Target:  5'- cGcCGUGCuggCGUGGCCGaUGccgacggucaGGCGGCCg -3'
miRNA:   3'- aC-GCGCGua-GCACCGGC-AC----------CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 5329 0.68 0.556879
Target:  5'- cGUGCaGCAguggGUGGCgGUGGGCugacauGCCc -3'
miRNA:   3'- aCGCG-CGUag--CACCGgCACCUGu-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 54263 0.68 0.5433
Target:  5'- gGCGCuGCGUgGagaagcugccgcgcUGGCCGgugGGGCGGCg -3'
miRNA:   3'- aCGCG-CGUAgC--------------ACCGGCa--CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 40514 0.68 0.55688
Target:  5'- uUGaCGCGCAcgcccaggUUGUcGGCgGUGG-CGACCu -3'
miRNA:   3'- -AC-GCGCGU--------AGCA-CCGgCACCuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.