miRNA display CGI


Results 101 - 120 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 27795 0.69 0.515466
Target:  5'- gGUGCGCGgcgguUCGguccUGGCCugcuccugGUGGGCGACUc -3'
miRNA:   3'- aCGCGCGU-----AGC----ACCGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66055 0.69 0.515465
Target:  5'- aGCGCGUcggCGUGcgugaucccccaGCCGUGGAaccgcaugucCGGCCa -3'
miRNA:   3'- aCGCGCGua-GCAC------------CGGCACCU----------GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 37712 0.7 0.427514
Target:  5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3'
miRNA:   3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54791 0.7 0.455885
Target:  5'- gGUGCGCggCGUGGCgggccugaaugaCGUuGAUAGCCg -3'
miRNA:   3'- aCGCGCGuaGCACCG------------GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20926 0.7 0.465565
Target:  5'- gGCaaGCGCGUgGUGGCCcUGGcCcACCg -3'
miRNA:   3'- aCG--CGCGUAgCACCGGcACCuGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 49834 0.7 0.436855
Target:  5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3'
miRNA:   3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24886 0.7 0.436855
Target:  5'- aGCGCGCcguugAUCGcguuggccUGGUCGuUGGACAggauGCCg -3'
miRNA:   3'- aCGCGCG-----UAGC--------ACCGGC-ACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 38154 0.7 0.465565
Target:  5'- cGCGCGCAUgGUcGCCGgacGAUAACa -3'
miRNA:   3'- aCGCGCGUAgCAcCGGCac-CUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 7899 0.7 0.465565
Target:  5'- aGCGUGCccUgGUGGCCGccagccagccggUGGAgAACCc -3'
miRNA:   3'- aCGCGCGu-AgCACCGGC------------ACCUgUUGG- -5'
19122 3' -57.1 NC_004684.1 + 19364 0.7 0.455885
Target:  5'- aGCgGCGCAaCaUGGCCGaGGAC-ACCg -3'
miRNA:   3'- aCG-CGCGUaGcACCGGCaCCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 22365 0.7 0.436856
Target:  5'- gGCG-GCGgucgCGcUGGCgGUGGACGugCa -3'
miRNA:   3'- aCGCgCGUa---GC-ACCGgCACCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 41991 0.7 0.418291
Target:  5'- -cCGCGCG--GUGGCCGcUGGcgACAACCu -3'
miRNA:   3'- acGCGCGUagCACCGGC-ACC--UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24887 0.7 0.436856
Target:  5'- cGCGC-CAUCGUGGCUacGaGAUGGCCg -3'
miRNA:   3'- aCGCGcGUAGCACCGGcaC-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 64292 0.71 0.409191
Target:  5'- cGCGCGCAgugCGcccUGGCCGUcguGGugGuugaacACCg -3'
miRNA:   3'- aCGCGCGUa--GC---ACCGGCA---CCugU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 50903 0.71 0.409191
Target:  5'- cGuCGUGCAUggccagcugcaCGUGGCC--GGACAGCCc -3'
miRNA:   3'- aC-GCGCGUA-----------GCACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4702 0.71 0.409191
Target:  5'- cGCGCGCAUCauucUGGCC-UGcuACGGCCa -3'
miRNA:   3'- aCGCGCGUAGc---ACCGGcACc-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13271 0.71 0.400215
Target:  5'- aGCGCGC-UgGUGGCCGccGGugGcuggugcgcGCCg -3'
miRNA:   3'- aCGCGCGuAgCACCGGCa-CCugU---------UGG- -5'
19122 3' -57.1 NC_004684.1 + 8528 0.71 0.374054
Target:  5'- gGCGUGCugugCG-GGCCGgacgaGGugGACCu -3'
miRNA:   3'- aCGCGCGua--GCaCCGGCa----CCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 1108 0.71 0.374054
Target:  5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3'
miRNA:   3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 3541 0.71 0.374054
Target:  5'- cGCGCGCA-CGUGGCacc-GACAGCg -3'
miRNA:   3'- aCGCGCGUaGCACCGgcacCUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.