Results 21 - 40 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 57970 | 0.73 | 0.281452 |
Target: 5'- gGUGCGCA-CGcugcUGGCCGaGGACAugACCa -3' miRNA: 3'- aCGCGCGUaGC----ACCGGCaCCUGU--UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 14380 | 0.73 | 0.310149 |
Target: 5'- aGCGCGC-UgGUGGCgcUGGACGACg -3' miRNA: 3'- aCGCGCGuAgCACCGgcACCUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 51196 | 0.73 | 0.317663 |
Target: 5'- cGCGCGCccuggccguacAUCGUGGCCagcaGGAUcACCu -3' miRNA: 3'- aCGCGCG-----------UAGCACCGGca--CCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 62983 | 0.72 | 0.35727 |
Target: 5'- gGUGCGCA-CGUGGCCgGUGGccgggaacGCGAUg -3' miRNA: 3'- aCGCGCGUaGCACCGG-CACC--------UGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 15631 | 0.72 | 0.325313 |
Target: 5'- cGCGCGCGagGccgGGuuGcUGGACGACUa -3' miRNA: 3'- aCGCGCGUagCa--CCggC-ACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 27796 | 0.72 | 0.325313 |
Target: 5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3' miRNA: 3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 60953 | 0.72 | 0.341021 |
Target: 5'- aUGCGUGCuguacaccUCGUGGCUGgUGGcguCGGCCu -3' miRNA: 3'- -ACGCGCGu-------AGCACCGGC-ACCu--GUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 16342 | 0.72 | 0.325313 |
Target: 5'- cGgGCGCAUCGUcaccGGCgGUGGccGCAuccuGCCg -3' miRNA: 3'- aCgCGCGUAGCA----CCGgCACC--UGU----UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 3490 | 0.72 | 0.35727 |
Target: 5'- gGC-CGCAcCGUGGCCGccaGGAC-GCCg -3' miRNA: 3'- aCGcGCGUaGCACCGGCa--CCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 46194 | 0.72 | 0.346646 |
Target: 5'- cGCGUGCuuggcccggauaacgUGUGGCCGaguccccucgUGGACAGCUg -3' miRNA: 3'- aCGCGCGua-------------GCACCGGC----------ACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 64292 | 0.71 | 0.409191 |
Target: 5'- cGCGCGCAgugCGcccUGGCCGUcguGGugGuugaacACCg -3' miRNA: 3'- aCGCGCGUa--GC---ACCGGCA---CCugU------UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 33562 | 0.71 | 0.365596 |
Target: 5'- gGCGCgGCGUCGacaucCCGUGGuCGACCa -3' miRNA: 3'- aCGCG-CGUAGCacc--GGCACCuGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 57015 | 0.71 | 0.382645 |
Target: 5'- aGCGCGcCAUCGgggugcgcUGGUCGgucacGGugGGCCa -3' miRNA: 3'- aCGCGC-GUAGC--------ACCGGCa----CCugUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 22703 | 0.71 | 0.382645 |
Target: 5'- gGCgGCGCAggaCGUggccaaGGCCGUGGcuggcacgcGCGACCg -3' miRNA: 3'- aCG-CGCGUa--GCA------CCGGCACC---------UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 55859 | 0.71 | 0.382645 |
Target: 5'- aGUGCGaCGUCGacgccaaggUGGCCG-GGGCAuggACCu -3' miRNA: 3'- aCGCGC-GUAGC---------ACCGGCaCCUGU---UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 62461 | 0.71 | 0.365596 |
Target: 5'- aGCGCuccGgGagGUGGCCGUuGGCGACCg -3' miRNA: 3'- aCGCG---CgUagCACCGGCAcCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 13271 | 0.71 | 0.400215 |
Target: 5'- aGCGCGC-UgGUGGCCGccGGugGcuggugcgcGCCg -3' miRNA: 3'- aCGCGCGuAgCACCGGCa-CCugU---------UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 4702 | 0.71 | 0.409191 |
Target: 5'- cGCGCGCAUCauucUGGCC-UGcuACGGCCa -3' miRNA: 3'- aCGCGCGUAGc---ACCGGcACc-UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 50903 | 0.71 | 0.409191 |
Target: 5'- cGuCGUGCAUggccagcugcaCGUGGCC--GGACAGCCc -3' miRNA: 3'- aC-GCGCGUA-----------GCACCGGcaCCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 16444 | 0.71 | 0.365595 |
Target: 5'- gGCGCacacCAUCGUGcGCC-UGGACGagGCCg -3' miRNA: 3'- aCGCGc---GUAGCAC-CGGcACCUGU--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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