Results 41 - 60 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 55859 | 0.71 | 0.382645 |
Target: 5'- aGUGCGaCGUCGacgccaaggUGGCCG-GGGCAuggACCu -3' miRNA: 3'- aCGCGC-GUAGC---------ACCGGCaCCUGU---UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 57015 | 0.71 | 0.382645 |
Target: 5'- aGCGCGcCAUCGgggugcgcUGGUCGgucacGGugGGCCa -3' miRNA: 3'- aCGCGC-GUAGC--------ACCGGCa----CCugUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 13271 | 0.71 | 0.400215 |
Target: 5'- aGCGCGC-UgGUGGCCGccGGugGcuggugcgcGCCg -3' miRNA: 3'- aCGCGCGuAgCACCGGCa-CCugU---------UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 64292 | 0.71 | 0.409191 |
Target: 5'- cGCGCGCAgugCGcccUGGCCGUcguGGugGuugaacACCg -3' miRNA: 3'- aCGCGCGUa--GC---ACCGGCA---CCugU------UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 50903 | 0.71 | 0.409191 |
Target: 5'- cGuCGUGCAUggccagcugcaCGUGGCC--GGACAGCCc -3' miRNA: 3'- aC-GCGCGUA-----------GCACCGGcaCCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 4702 | 0.71 | 0.409191 |
Target: 5'- cGCGCGCAUCauucUGGCC-UGcuACGGCCa -3' miRNA: 3'- aCGCGCGUAGc---ACCGGcACc-UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 41991 | 0.7 | 0.418291 |
Target: 5'- -cCGCGCG--GUGGCCGcUGGcgACAACCu -3' miRNA: 3'- acGCGCGUagCACCGGC-ACC--UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 37712 | 0.7 | 0.427514 |
Target: 5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3' miRNA: 3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 24886 | 0.7 | 0.436855 |
Target: 5'- aGCGCGCcguugAUCGcguuggccUGGUCGuUGGACAggauGCCg -3' miRNA: 3'- aCGCGCG-----UAGC--------ACCGGC-ACCUGU----UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 49834 | 0.7 | 0.436855 |
Target: 5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3' miRNA: 3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 22365 | 0.7 | 0.436856 |
Target: 5'- gGCG-GCGgucgCGcUGGCgGUGGACGugCa -3' miRNA: 3'- aCGCgCGUa---GC-ACCGgCACCUGUugG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 24887 | 0.7 | 0.436856 |
Target: 5'- cGCGC-CAUCGUGGCUacGaGAUGGCCg -3' miRNA: 3'- aCGCGcGUAGCACCGGcaC-CUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 19364 | 0.7 | 0.455885 |
Target: 5'- aGCgGCGCAaCaUGGCCGaGGAC-ACCg -3' miRNA: 3'- aCG-CGCGUaGcACCGGCaCCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 54791 | 0.7 | 0.455885 |
Target: 5'- gGUGCGCggCGUGGCgggccugaaugaCGUuGAUAGCCg -3' miRNA: 3'- aCGCGCGuaGCACCG------------GCAcCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 7899 | 0.7 | 0.465565 |
Target: 5'- aGCGUGCccUgGUGGCCGccagccagccggUGGAgAACCc -3' miRNA: 3'- aCGCGCGu-AgCACCGGC------------ACCUgUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 38154 | 0.7 | 0.465565 |
Target: 5'- cGCGCGCAUgGUcGCCGgacGAUAACa -3' miRNA: 3'- aCGCGCGUAgCAcCGGCac-CUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 20926 | 0.7 | 0.465565 |
Target: 5'- gGCaaGCGCGUgGUGGCCcUGGcCcACCg -3' miRNA: 3'- aCG--CGCGUAgCACCGGcACCuGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 47222 | 0.69 | 0.475351 |
Target: 5'- cGUGCGCGUCGaacGCCGcaaGGGCcgGGCCg -3' miRNA: 3'- aCGCGCGUAGCac-CGGCa--CCUG--UUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 42663 | 0.69 | 0.475352 |
Target: 5'- aGCGCgguggaggGCAUCacGGCgGUGGcCAACCa -3' miRNA: 3'- aCGCG--------CGUAGcaCCGgCACCuGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 43888 | 0.69 | 0.475352 |
Target: 5'- --gGCGCAUCGcugGGCagGUGGAUGACa -3' miRNA: 3'- acgCGCGUAGCa--CCGg-CACCUGUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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