miRNA display CGI


Results 61 - 80 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 4773 0.69 0.476336
Target:  5'- cGUGCGCGUCGccagcaagcgccucgGcGCgGUGGcCGACCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------C-CGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 41902 0.69 0.484246
Target:  5'- cGCGCuggccgaccggacGaCAUCGUGGCCGUGaccaaGGCggUCa -3'
miRNA:   3'- aCGCG-------------C-GUAGCACCGGCAC-----CUGuuGG- -5'
19122 3' -57.1 NC_004684.1 + 19838 0.69 0.485239
Target:  5'- aGCGCGacaaCAUCGUGGCCcUGcGCGAUg -3'
miRNA:   3'- aCGCGC----GUAGCACCGGcACcUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 63736 0.69 0.485239
Target:  5'- gUGUGCGCAUCG-GuGCCGaccGGcAUGACCc -3'
miRNA:   3'- -ACGCGCGUAGCaC-CGGCa--CC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 28177 0.69 0.48524
Target:  5'- gGCGUGCAaccugcgCGaGGCgcaCGUGGACAGCa -3'
miRNA:   3'- aCGCGCGUa------GCaCCG---GCACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 65894 0.69 0.495224
Target:  5'- gGCGCGCAgguUGGCCaccaGGGCcGCCg -3'
miRNA:   3'- aCGCGCGUagcACCGGca--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 59887 0.69 0.495224
Target:  5'- cGCGCGCggCGgccaGCgCGUaGACAACCa -3'
miRNA:   3'- aCGCGCGuaGCac--CG-GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 25070 0.69 0.495224
Target:  5'- cGCGCGCAcCGgcaaCGUGGcCGACCu -3'
miRNA:   3'- aCGCGCGUaGCaccgGCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 10232 0.69 0.504289
Target:  5'- cGUGCGCGUCGgccaccGCCGccaUGGAggcgaacCAGCCg -3'
miRNA:   3'- aCGCGCGUAGCac----CGGC---ACCU-------GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 6476 0.69 0.505301
Target:  5'- gGCGUGCGacgcCGUGGCCGagaUGGuCGAUg -3'
miRNA:   3'- aCGCGCGUa---GCACCGGC---ACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 35634 0.69 0.505301
Target:  5'- -cCGCGCGUgGUGGCCGagucguuccUGGAguCGACa -3'
miRNA:   3'- acGCGCGUAgCACCGGC---------ACCU--GUUGg -5'
19122 3' -57.1 NC_004684.1 + 1767 0.69 0.515465
Target:  5'- aGCuGCGCG-CGUGGCUGgacgccaaccaGGACGccGCCg -3'
miRNA:   3'- aCG-CGCGUaGCACCGGCa----------CCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 66055 0.69 0.515465
Target:  5'- aGCGCGUcggCGUGcgugaucccccaGCCGUGGAaccgcaugucCGGCCa -3'
miRNA:   3'- aCGCGCGua-GCAC------------CGGCACCU----------GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27795 0.69 0.515466
Target:  5'- gGUGCGCGgcgguUCGguccUGGCCugcuccugGUGGGCGACUc -3'
miRNA:   3'- aCGCGCGU-----AGC----ACCGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20394 0.69 0.515466
Target:  5'- -aCGCGCA-CGaGGCCGaGGuCAGCCu -3'
miRNA:   3'- acGCGCGUaGCaCCGGCaCCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 9200 0.69 0.515466
Target:  5'- uUGgGCGCAgugggcgCGUGaCCG-GGugGGCCa -3'
miRNA:   3'- -ACgCGCGUa------GCACcGGCaCCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13167 0.69 0.525711
Target:  5'- gUGaCGCGCA-CcUGGUCcaGGACAGCCa -3'
miRNA:   3'- -AC-GCGCGUaGcACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54856 0.69 0.525711
Target:  5'- --aGCGCGUCGaUGuCgGUGGGCAGCUc -3'
miRNA:   3'- acgCGCGUAGC-ACcGgCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 47628 0.69 0.525711
Target:  5'- -uCG-GCGUCGgccuuGUCGUGGACGGCCa -3'
miRNA:   3'- acGCgCGUAGCac---CGGCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21015 0.68 0.536033
Target:  5'- aGCGacaucgGCAUCGUgauGGCCGagcacGACGACCa -3'
miRNA:   3'- aCGCg-----CGUAGCA---CCGGCac---CUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.