miRNA display CGI


Results 41 - 60 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 13107 0.66 0.684521
Target:  5'- aUGCGCGCAcCcccGGCCGgGuGGCGGCg -3'
miRNA:   3'- -ACGCGCGUaGca-CCGGCaC-CUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 13167 0.69 0.525711
Target:  5'- gUGaCGCGCA-CcUGGUCcaGGACAGCCa -3'
miRNA:   3'- -AC-GCGCGUaGcACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13271 0.71 0.400215
Target:  5'- aGCGCGC-UgGUGGCCGccGGugGcuggugcgcGCCg -3'
miRNA:   3'- aCGCGCGuAgCACCGGCa-CCugU---------UGG- -5'
19122 3' -57.1 NC_004684.1 + 13671 0.67 0.599195
Target:  5'- gGCGCacgguccagGaCAUgGUGGCCGguucGGGCAcGCCg -3'
miRNA:   3'- aCGCG---------C-GUAgCACCGGCa---CCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 14380 0.73 0.310149
Target:  5'- aGCGCGC-UgGUGGCgcUGGACGACg -3'
miRNA:   3'- aCGCGCGuAgCACCGgcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 15375 0.74 0.267911
Target:  5'- cGCGCGCuggugAUCGgcuacgaGGCCGccaucgGGGCGGCCa -3'
miRNA:   3'- aCGCGCG-----UAGCa------CCGGCa-----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 15584 0.81 0.095491
Target:  5'- cGCGCGCggCcUGGCCGUGGACcggGACUa -3'
miRNA:   3'- aCGCGCGuaGcACCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 15631 0.72 0.325313
Target:  5'- cGCGCGCGagGccgGGuuGcUGGACGACUa -3'
miRNA:   3'- aCGCGCGUagCa--CCggC-ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16145 0.66 0.681345
Target:  5'- aUGCGCGCGUgCGgcaucgaccGGCCGaUGGcCAaggugauccugcugGCCa -3'
miRNA:   3'- -ACGCGCGUA-GCa--------CCGGC-ACCuGU--------------UGG- -5'
19122 3' -57.1 NC_004684.1 + 16342 0.72 0.325313
Target:  5'- cGgGCGCAUCGUcaccGGCgGUGGccGCAuccuGCCg -3'
miRNA:   3'- aCgCGCGUAGCA----CCGgCACC--UGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 16444 0.71 0.365595
Target:  5'- gGCGCacacCAUCGUGcGCC-UGGACGagGCCg -3'
miRNA:   3'- aCGCGc---GUAGCAC-CGGcACCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 16791 0.74 0.274615
Target:  5'- gUGCgGCGCGUCGU-GUgGUGGGCGcGCCa -3'
miRNA:   3'- -ACG-CGCGUAGCAcCGgCACCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 18016 0.71 0.365595
Target:  5'- gGCG-GCAacaUCGgcaaGGCCaUGGACAGCCu -3'
miRNA:   3'- aCGCgCGU---AGCa---CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 18585 0.66 0.652613
Target:  5'- -cCGCGC-UgGUGGCUcUGGACGAUg -3'
miRNA:   3'- acGCGCGuAgCACCGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 18838 0.67 0.620542
Target:  5'- gGCGCGCAggccgaggUGUGGCaggagGUcGGCAACUa -3'
miRNA:   3'- aCGCGCGUa-------GCACCGg----CAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 19065 0.68 0.577953
Target:  5'- aGCGCGCucaaCG-GuGCCcUGGACAGCg -3'
miRNA:   3'- aCGCGCGua--GCaC-CGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 19121 0.81 0.087877
Target:  5'- cGUGCGCAUgGUGGCCGacGACAACg -3'
miRNA:   3'- aCGCGCGUAgCACCGGCacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 19364 0.7 0.455885
Target:  5'- aGCgGCGCAaCaUGGCCGaGGAC-ACCg -3'
miRNA:   3'- aCG-CGCGUaGcACCGGCaCCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 19685 0.66 0.661148
Target:  5'- gGCGCgGCGgcaaggCcUGGCCGagccaagaccugGGACGGCCa -3'
miRNA:   3'- aCGCG-CGUa-----GcACCGGCa-----------CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 19838 0.69 0.485239
Target:  5'- aGCGCGacaaCAUCGUGGCCcUGcGCGAUg -3'
miRNA:   3'- aCGCGC----GUAGCACCGGcACcUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.