miRNA display CGI


Results 61 - 80 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 20051 0.67 0.640859
Target:  5'- aGCGCggugaacGCGuUCGUGGCCGcgcucaagcUGGcguuCAACCc -3'
miRNA:   3'- aCGCG-------CGU-AGCACCGGC---------ACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20394 0.69 0.515466
Target:  5'- -aCGCGCA-CGaGGCCGaGGuCAGCCu -3'
miRNA:   3'- acGCGCGUaGCaCCGGCaCCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20926 0.7 0.465565
Target:  5'- gGCaaGCGCGUgGUGGCCcUGGcCcACCg -3'
miRNA:   3'- aCG--CGCGUAgCACCGGcACCuGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 20973 0.73 0.295529
Target:  5'- aUGCGCcgggaCAUgcUGGCCGUGGACccGACCa -3'
miRNA:   3'- -ACGCGc----GUAgcACCGGCACCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 21015 0.68 0.536033
Target:  5'- aGCGacaucgGCAUCGUgauGGCCGagcacGACGACCa -3'
miRNA:   3'- aCGCg-----CGUAGCA---CCGGCac---CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21302 0.66 0.66328
Target:  5'- cUGCGCaacGCAggCGaGGCgGUGGuccggcGCGACCg -3'
miRNA:   3'- -ACGCG---CGUa-GCaCCGgCACC------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21389 0.71 0.382645
Target:  5'- cGUGCGCAcCGUGGCCG-GuGACuuCa -3'
miRNA:   3'- aCGCGCGUaGCACCGGCaC-CUGuuGg -5'
19122 3' -57.1 NC_004684.1 + 21490 0.66 0.695076
Target:  5'- aGCGCaccaaCAUCGUGuucGCCGccagcgUGGACGGCg -3'
miRNA:   3'- aCGCGc----GUAGCAC---CGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 21693 0.66 0.652612
Target:  5'- aUGUGCGaCAcCGUGGUCaUGGcuCGGCCu -3'
miRNA:   3'- -ACGCGC-GUaGCACCGGcACCu-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 22365 0.7 0.436856
Target:  5'- gGCG-GCGgucgCGcUGGCgGUGGACGugCa -3'
miRNA:   3'- aCGCgCGUa---GC-ACCGgCACCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 22703 0.71 0.382645
Target:  5'- gGCgGCGCAggaCGUggccaaGGCCGUGGcuggcacgcGCGACCg -3'
miRNA:   3'- aCG-CGCGUa--GCA------CCGGCACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 23549 0.77 0.164315
Target:  5'- gGCG-GCAUCGgucgcGGCC-UGGACAGCCu -3'
miRNA:   3'- aCGCgCGUAGCa----CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 23756 0.76 0.187457
Target:  5'- gGUGCGCAguUCG-GGCCGUGGggcGCGGCg -3'
miRNA:   3'- aCGCGCGU--AGCaCCGGCACC---UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 23771 0.67 0.641928
Target:  5'- cGCGCuCGgccacacCGUGGCCG-GGcuguucaccGCAACCg -3'
miRNA:   3'- aCGCGcGUa------GCACCGGCaCC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24129 0.67 0.588556
Target:  5'- gGUGCGCggCGacaUGGCCGUGcucucCGGCCc -3'
miRNA:   3'- aCGCGCGuaGC---ACCGGCACcu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24606 0.67 0.631235
Target:  5'- --aGCGgA-CGUGGCgCGcaUGGGCGGCCa -3'
miRNA:   3'- acgCGCgUaGCACCG-GC--ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24886 0.7 0.436855
Target:  5'- aGCGCGCcguugAUCGcguuggccUGGUCGuUGGACAggauGCCg -3'
miRNA:   3'- aCGCGCG-----UAGC--------ACCGGC-ACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 24887 0.7 0.436856
Target:  5'- cGCGC-CAUCGUGGCUacGaGAUGGCCg -3'
miRNA:   3'- aCGCGcGUAGCACCGGcaC-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 25054 0.67 0.631234
Target:  5'- gGCGaUGUAg-GUGGCCa-GGGCGGCCg -3'
miRNA:   3'- aCGC-GCGUagCACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 25070 0.69 0.495224
Target:  5'- cGCGCGCAcCGgcaaCGUGGcCGACCu -3'
miRNA:   3'- aCGCGCGUaGCaccgGCACCuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.