miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 57970 0.73 0.281452
Target:  5'- gGUGCGCA-CGcugcUGGCCGaGGACAugACCa -3'
miRNA:   3'- aCGCGCGUaGC----ACCGGCaCCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 57416 0.67 0.631234
Target:  5'- aUGCcgaGCGCGUCGaaGGCCuccaugaccGUGG-CGACCc -3'
miRNA:   3'- -ACG---CGCGUAGCa-CCGG---------CACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 57015 0.71 0.382645
Target:  5'- aGCGCGcCAUCGgggugcgcUGGUCGgucacGGugGGCCa -3'
miRNA:   3'- aCGCGC-GUAGC--------ACCGGCa----CCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55946 0.73 0.318422
Target:  5'- gGUGCGCGUCGgcccggucagcuccgGGUuggcgaaGUGGGCGGCCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------CCGg------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55859 0.71 0.382645
Target:  5'- aGUGCGaCGUCGacgccaaggUGGCCG-GGGCAuggACCu -3'
miRNA:   3'- aCGCGC-GUAGC---------ACCGGCaCCUGU---UGG- -5'
19122 3' -57.1 NC_004684.1 + 55743 0.68 0.556879
Target:  5'- cGcCGUGCuggCGUGGCCGaUGccgacggucaGGCGGCCg -3'
miRNA:   3'- aC-GCGCGua-GCACCGGC-AC----------CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55585 0.68 0.561078
Target:  5'- gGCGCGC-UCGcgcccuucuccacggUGGCC-UGGuCGGCCc -3'
miRNA:   3'- aCGCGCGuAGC---------------ACCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54856 0.69 0.525711
Target:  5'- --aGCGCGUCGaUGuCgGUGGGCAGCUc -3'
miRNA:   3'- acgCGCGUAGC-ACcGgCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54791 0.7 0.455885
Target:  5'- gGUGCGCggCGUGGCgggccugaaugaCGUuGAUAGCCg -3'
miRNA:   3'- aCGCGCGuaGCACCG------------GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54629 0.74 0.274615
Target:  5'- cGCGCGCGagGacggGGUguUGUGGGCGACCc -3'
miRNA:   3'- aCGCGCGUagCa---CCG--GCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54590 0.68 0.536033
Target:  5'- cGgGCGCGUCGUcGGCg--GGGguGCCg -3'
miRNA:   3'- aCgCGCGUAGCA-CCGgcaCCUguUGG- -5'
19122 3' -57.1 NC_004684.1 + 54298 0.68 0.576895
Target:  5'- gUGCGCGCAUCGgcccccuUGGCgGcuGACAuuCCg -3'
miRNA:   3'- -ACGCGCGUAGC-------ACCGgCacCUGUu-GG- -5'
19122 3' -57.1 NC_004684.1 + 54263 0.68 0.5433
Target:  5'- gGCGCuGCGUgGagaagcugccgcgcUGGCCGgugGGGCGGCg -3'
miRNA:   3'- aCGCG-CGUAgC--------------ACCGGCa--CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 52735 0.67 0.609859
Target:  5'- gGCGCuGUccuccaggucGUCGUGGCCGcUGGcGCAGUCg -3'
miRNA:   3'- aCGCG-CG----------UAGCACCGGC-ACC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 52215 0.66 0.66328
Target:  5'- uUGCGaaucuccccgGCGUCGaucaGGCCGUGGu--GCCa -3'
miRNA:   3'- -ACGCg---------CGUAGCa---CCGGCACCuguUGG- -5'
19122 3' -57.1 NC_004684.1 + 51196 0.73 0.317663
Target:  5'- cGCGCGCccuggccguacAUCGUGGCCagcaGGAUcACCu -3'
miRNA:   3'- aCGCGCG-----------UAGCACCGGca--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 50903 0.71 0.409191
Target:  5'- cGuCGUGCAUggccagcugcaCGUGGCC--GGACAGCCc -3'
miRNA:   3'- aC-GCGCGUA-----------GCACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 50312 0.67 0.641928
Target:  5'- cGCGUGCccaGUCGgugcgcccGGCCaggcGGGCGGCCu -3'
miRNA:   3'- aCGCGCG---UAGCa-------CCGGca--CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 50015 0.66 0.690861
Target:  5'- gUGUGCGCAccgucggcggcagCGUGGCCGgugccUGGcuccaGGCCa -3'
miRNA:   3'- -ACGCGCGUa------------GCACCGGC-----ACCug---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 49834 0.7 0.436855
Target:  5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3'
miRNA:   3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.