miRNA display CGI


Results 41 - 60 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 49544 0.66 0.684521
Target:  5'- gUGUGCGCG--GUGGCCGacuucGGGCuggcguGGCCu -3'
miRNA:   3'- -ACGCGCGUagCACCGGCa----CCUG------UUGG- -5'
19122 3' -57.1 NC_004684.1 + 48961 0.74 0.261341
Target:  5'- gGCGgGCGggGUGGCCG-GGGCGGgCg -3'
miRNA:   3'- aCGCgCGUagCACCGGCaCCUGUUgG- -5'
19122 3' -57.1 NC_004684.1 + 47628 0.69 0.525711
Target:  5'- -uCG-GCGUCGgccuuGUCGUGGACGGCCa -3'
miRNA:   3'- acGCgCGUAGCac---CGGCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 47222 0.69 0.475351
Target:  5'- cGUGCGCGUCGaacGCCGcaaGGGCcgGGCCg -3'
miRNA:   3'- aCGCGCGUAGCac-CGGCa--CCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 47129 0.66 0.652613
Target:  5'- cGUGCGCcUCgGUGGC-GUaGGCGGCCc -3'
miRNA:   3'- aCGCGCGuAG-CACCGgCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 46938 0.66 0.695076
Target:  5'- gGUGCGCAgcaucuUCGccGCCGUGcACAGCg -3'
miRNA:   3'- aCGCGCGU------AGCacCGGCACcUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 46605 0.67 0.620542
Target:  5'- uUGCGUGCcgguggcuUCGgGGCCaccgccuccgguGUGGACGGCa -3'
miRNA:   3'- -ACGCGCGu-------AGCaCCGG------------CACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 46194 0.72 0.346646
Target:  5'- cGCGUGCuuggcccggauaacgUGUGGCCGaguccccucgUGGACAGCUg -3'
miRNA:   3'- aCGCGCGua-------------GCACCGGC----------ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 44477 0.67 0.609859
Target:  5'- cUGCGUGCG-CGUGGaccaCCG-GGACAGg- -3'
miRNA:   3'- -ACGCGCGUaGCACC----GGCaCCUGUUgg -5'
19122 3' -57.1 NC_004684.1 + 43888 0.69 0.475352
Target:  5'- --gGCGCAUCGcugGGCagGUGGAUGACa -3'
miRNA:   3'- acgCGCGUAGCa--CCGg-CACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 42663 0.69 0.475352
Target:  5'- aGCGCgguggaggGCAUCacGGCgGUGGcCAACCa -3'
miRNA:   3'- aCGCG--------CGUAGcaCCGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 42522 0.67 0.620542
Target:  5'- gGCGCGC-UCaccGCCGUGGuCGGCg -3'
miRNA:   3'- aCGCGCGuAGcacCGGCACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 42184 0.66 0.652613
Target:  5'- cUGCGCggugaGCAgUG-GGCCGUGGAgcuggUGGCCg -3'
miRNA:   3'- -ACGCG-----CGUaGCaCCGGCACCU-----GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 41991 0.7 0.418291
Target:  5'- -cCGCGCG--GUGGCCGcUGGcgACAACCu -3'
miRNA:   3'- acGCGCGUagCACCGGC-ACC--UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 41902 0.69 0.484246
Target:  5'- cGCGCuggccgaccggacGaCAUCGUGGCCGUGaccaaGGCggUCa -3'
miRNA:   3'- aCGCG-------------C-GUAGCACCGGCAC-----CUGuuGG- -5'
19122 3' -57.1 NC_004684.1 + 40706 0.75 0.224645
Target:  5'- aGCuGgGCGgcgGUGGCCG-GGACGACCa -3'
miRNA:   3'- aCG-CgCGUag-CACCGGCaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 40514 0.68 0.55688
Target:  5'- uUGaCGCGCAcgcccaggUUGUcGGCgGUGG-CGACCu -3'
miRNA:   3'- -AC-GCGCGU--------AGCA-CCGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 40098 0.67 0.620542
Target:  5'- aGCG-GCcgaucUCGUGGCCGUagcGGGCGcuggcgGCCu -3'
miRNA:   3'- aCGCgCGu----AGCACCGGCA---CCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 40025 0.74 0.254902
Target:  5'- gGCGCG-AUgGUGGCCuUGGGCAucauGCCg -3'
miRNA:   3'- aCGCGCgUAgCACCGGcACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 39671 0.67 0.641928
Target:  5'- cGCGUGCcUCGUgcucgcgcucGGCCGccGaGAUGACCg -3'
miRNA:   3'- aCGCGCGuAGCA----------CCGGCa-C-CUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.