miRNA display CGI


Results 61 - 80 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 38872 0.66 0.695076
Target:  5'- cGCGCGguUCaacGCCGccacgcUGGACAGCg -3'
miRNA:   3'- aCGCGCguAGcacCGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 38154 0.7 0.465565
Target:  5'- cGCGCGCAUgGUcGCCGgacGAUAACa -3'
miRNA:   3'- aCGCGCGUAgCAcCGGCac-CUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 37712 0.7 0.427514
Target:  5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3'
miRNA:   3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 36871 0.74 0.267911
Target:  5'- gGCGacauGC-UgGUGGCCGUGGucgGCAACCa -3'
miRNA:   3'- aCGCg---CGuAgCACCGGCACC---UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 36419 0.67 0.631235
Target:  5'- aGCGCcacgGCuUCGUGGUgGacGACGACCc -3'
miRNA:   3'- aCGCG----CGuAGCACCGgCacCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 35883 0.67 0.624818
Target:  5'- cGCGCGgGcCGUGGUccccgacacugcauaCGUGGGCu-CCg -3'
miRNA:   3'- aCGCGCgUaGCACCG---------------GCACCUGuuGG- -5'
19122 3' -57.1 NC_004684.1 + 35634 0.69 0.505301
Target:  5'- -cCGCGCGUgGUGGCCGagucguuccUGGAguCGACa -3'
miRNA:   3'- acGCGCGUAgCACCGGC---------ACCU--GUUGg -5'
19122 3' -57.1 NC_004684.1 + 34873 0.67 0.641928
Target:  5'- uUGUGCGCGaCGUgaaGGCCuUGGcCAACg -3'
miRNA:   3'- -ACGCGCGUaGCA---CCGGcACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 34839 0.66 0.652613
Target:  5'- cUGCuGCGCAUgca-GCCGUGGGCGguuCCg -3'
miRNA:   3'- -ACG-CGCGUAgcacCGGCACCUGUu--GG- -5'
19122 3' -57.1 NC_004684.1 + 33562 0.71 0.365596
Target:  5'- gGCGCgGCGUCGacaucCCGUGGuCGACCa -3'
miRNA:   3'- aCGCG-CGUAGCacc--GGCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 31578 0.68 0.576894
Target:  5'- gGCG-GCGUCGUGaaugaccaccgucGCCGgGGACugcGCCa -3'
miRNA:   3'- aCGCgCGUAGCAC-------------CGGCaCCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 30418 0.73 0.317663
Target:  5'- gGUGCGCGUCGgcgaaaccgaacUGGCCGUcGuuGACCa -3'
miRNA:   3'- aCGCGCGUAGC------------ACCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 30211 0.66 0.663279
Target:  5'- cGCGCGCGUCGaugcucGGCgcgaCGUGGcccuCGGCg -3'
miRNA:   3'- aCGCGCGUAGCa-----CCG----GCACCu---GUUGg -5'
19122 3' -57.1 NC_004684.1 + 30149 0.79 0.125604
Target:  5'- gUGUGCGCGUC--GGCCaGUGGGCGAUCa -3'
miRNA:   3'- -ACGCGCGUAGcaCCGG-CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 29695 0.75 0.236365
Target:  5'- gUGCGCGCGUCaacGUCGUGGGCcagAACCu -3'
miRNA:   3'- -ACGCGCGUAGcacCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 28177 0.69 0.48524
Target:  5'- gGCGUGCAaccugcgCGaGGCgcaCGUGGACAGCa -3'
miRNA:   3'- aCGCGCGUa------GCaCCG---GCACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 27796 0.72 0.325313
Target:  5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3'
miRNA:   3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27795 0.69 0.515466
Target:  5'- gGUGCGCGgcgguUCGguccUGGCCugcuccugGUGGGCGACUc -3'
miRNA:   3'- aCGCGCGU-----AGC----ACCGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 25308 0.66 0.684521
Target:  5'- gGCgGCGguUCGUcGGCCcUGGcggcguaugGCGGCCu -3'
miRNA:   3'- aCG-CGCguAGCA-CCGGcACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 25070 0.69 0.495224
Target:  5'- cGCGCGCAcCGgcaaCGUGGcCGACCu -3'
miRNA:   3'- aCGCGCGUaGCaccgGCACCuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.