miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 47222 0.69 0.475351
Target:  5'- cGUGCGCGUCGaacGCCGcaaGGGCcgGGCCg -3'
miRNA:   3'- aCGCGCGUAGCac-CGGCa--CCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 49834 0.7 0.436855
Target:  5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3'
miRNA:   3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16444 0.71 0.365595
Target:  5'- gGCGCacacCAUCGUGcGCC-UGGACGagGCCg -3'
miRNA:   3'- aCGCGc---GUAGCAC-CGGcACCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 40025 0.74 0.254902
Target:  5'- gGCGCG-AUgGUGGCCuUGGGCAucauGCCg -3'
miRNA:   3'- aCGCGCgUAgCACCGGcACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 5616 0.68 0.536033
Target:  5'- gGCGCGCAUgGU-GCUGgagcUGGAC-GCCu -3'
miRNA:   3'- aCGCGCGUAgCAcCGGC----ACCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 10232 0.69 0.504289
Target:  5'- cGUGCGCGUCGgccaccGCCGccaUGGAggcgaacCAGCCg -3'
miRNA:   3'- aCGCGCGUAGCac----CGGC---ACCU-------GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 37712 0.7 0.427514
Target:  5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3'
miRNA:   3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66136 0.75 0.236365
Target:  5'- aGCcaGCGCAUCuG-GGCCGgggccGGGCGACCg -3'
miRNA:   3'- aCG--CGCGUAG-CaCCGGCa----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 59887 0.69 0.495224
Target:  5'- cGCGCGCggCGgccaGCgCGUaGACAACCa -3'
miRNA:   3'- aCGCGCGuaGCac--CG-GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 15584 0.81 0.095491
Target:  5'- cGCGCGCggCcUGGCCGUGGACcggGACUa -3'
miRNA:   3'- aCGCGCGuaGcACCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 24886 0.7 0.436855
Target:  5'- aGCGCGCcguugAUCGcguuggccUGGUCGuUGGACAggauGCCg -3'
miRNA:   3'- aCGCGCG-----UAGC--------ACCGGC-ACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 4773 0.69 0.476336
Target:  5'- cGUGCGCGUCGccagcaagcgccucgGcGCgGUGGcCGACCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------C-CGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 1108 0.71 0.374054
Target:  5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3'
miRNA:   3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 18016 0.71 0.365595
Target:  5'- gGCG-GCAacaUCGgcaaGGCCaUGGACAGCCu -3'
miRNA:   3'- aCGCgCGU---AGCa---CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27796 0.72 0.325313
Target:  5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3'
miRNA:   3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20973 0.73 0.295529
Target:  5'- aUGCGCcgggaCAUgcUGGCCGUGGACccGACCa -3'
miRNA:   3'- -ACGCGc----GUAgcACCGGCACCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 11404 0.68 0.556879
Target:  5'- cGCGCGCGaUGUGuucGCCGUaGAC-GCCg -3'
miRNA:   3'- aCGCGCGUaGCAC---CGGCAcCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 54590 0.68 0.536033
Target:  5'- cGgGCGCGUCGUcGGCg--GGGguGCCg -3'
miRNA:   3'- aCgCGCGUAGCA-CCGgcaCCUguUGG- -5'
19122 3' -57.1 NC_004684.1 + 54856 0.69 0.525711
Target:  5'- --aGCGCGUCGaUGuCgGUGGGCAGCUc -3'
miRNA:   3'- acgCGCGUAGC-ACcGgCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 6476 0.69 0.505301
Target:  5'- gGCGUGCGacgcCGUGGCCGagaUGGuCGAUg -3'
miRNA:   3'- aCGCGCGUa---GCACCGGC---ACCuGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.