Results 41 - 60 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 3' | -57.1 | NC_004684.1 | + | 2956 | 0.68 | 0.536033 |
Target: 5'- gGCGCGCAcaucgagaccaUCG-GuGCCcUGGACGGCg -3' miRNA: 3'- aCGCGCGU-----------AGCaC-CGGcACCUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 37712 | 0.7 | 0.427514 |
Target: 5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3' miRNA: 3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 66136 | 0.75 | 0.236365 |
Target: 5'- aGCcaGCGCAUCuG-GGCCGgggccGGGCGACCg -3' miRNA: 3'- aCG--CGCGUAG-CaCCGGCa----CCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 21015 | 0.68 | 0.536033 |
Target: 5'- aGCGacaucgGCAUCGUgauGGCCGagcacGACGACCa -3' miRNA: 3'- aCGCg-----CGUAGCA---CCGGCac---CUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 15584 | 0.81 | 0.095491 |
Target: 5'- cGCGCGCggCcUGGCCGUGGACcggGACUa -3' miRNA: 3'- aCGCGCGuaGcACCGGCACCUG---UUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 57416 | 0.67 | 0.631234 |
Target: 5'- aUGCcgaGCGCGUCGaaGGCCuccaugaccGUGG-CGACCc -3' miRNA: 3'- -ACG---CGCGUAGCa-CCGG---------CACCuGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 20973 | 0.73 | 0.295529 |
Target: 5'- aUGCGCcgggaCAUgcUGGCCGUGGACccGACCa -3' miRNA: 3'- -ACGCGc----GUAgcACCGGCACCUG--UUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 546 | 0.67 | 0.631234 |
Target: 5'- aGCGCG-GUCGaGGCCGccaccgaggaGGACAagGCCg -3' miRNA: 3'- aCGCGCgUAGCaCCGGCa---------CCUGU--UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 46605 | 0.67 | 0.620542 |
Target: 5'- uUGCGUGCcgguggcuUCGgGGCCaccgccuccgguGUGGACGGCa -3' miRNA: 3'- -ACGCGCGu-------AGCaCCGG------------CACCUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 24129 | 0.67 | 0.588556 |
Target: 5'- gGUGCGCggCGacaUGGCCGUGcucucCGGCCc -3' miRNA: 3'- aCGCGCGuaGC---ACCGGCACcu---GUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 31578 | 0.68 | 0.576894 |
Target: 5'- gGCG-GCGUCGUGaaugaccaccgucGCCGgGGACugcGCCa -3' miRNA: 3'- aCGCgCGUAGCAC-------------CGGCaCCUGu--UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 11404 | 0.68 | 0.556879 |
Target: 5'- cGCGCGCGaUGUGuucGCCGUaGAC-GCCg -3' miRNA: 3'- aCGCGCGUaGCAC---CGGCAcCUGuUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 54590 | 0.68 | 0.536033 |
Target: 5'- cGgGCGCGUCGUcGGCg--GGGguGCCg -3' miRNA: 3'- aCgCGCGUAGCA-CCGgcaCCUguUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 1767 | 0.69 | 0.515465 |
Target: 5'- aGCuGCGCG-CGUGGCUGgacgccaaccaGGACGccGCCg -3' miRNA: 3'- aCG-CGCGUaGCACCGGCa----------CCUGU--UGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 59887 | 0.69 | 0.495224 |
Target: 5'- cGCGCGCggCGgccaGCgCGUaGACAACCa -3' miRNA: 3'- aCGCGCGuaGCac--CG-GCAcCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 47222 | 0.69 | 0.475351 |
Target: 5'- cGUGCGCGUCGaacGCCGcaaGGGCcgGGCCg -3' miRNA: 3'- aCGCGCGUAGCac-CGGCa--CCUG--UUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 49834 | 0.7 | 0.436855 |
Target: 5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3' miRNA: 3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 1108 | 0.71 | 0.374054 |
Target: 5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3' miRNA: 3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 18016 | 0.71 | 0.365595 |
Target: 5'- gGCG-GCAacaUCGgcaaGGCCaUGGACAGCCu -3' miRNA: 3'- aCGCgCGU---AGCa---CCGGcACCUGUUGG- -5' |
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19122 | 3' | -57.1 | NC_004684.1 | + | 27796 | 0.72 | 0.325313 |
Target: 5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3' miRNA: 3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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