miRNA display CGI


Results 61 - 80 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 30418 0.73 0.317663
Target:  5'- gGUGCGCGUCGgcgaaaccgaacUGGCCGUcGuuGACCa -3'
miRNA:   3'- aCGCGCGUAGC------------ACCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16342 0.72 0.325313
Target:  5'- cGgGCGCAUCGUcaccGGCgGUGGccGCAuccuGCCg -3'
miRNA:   3'- aCgCGCGUAGCA----CCGgCACC--UGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 8061 0.71 0.365595
Target:  5'- gGC-CGgGUCGUGGCCGagUGGcCAAUCg -3'
miRNA:   3'- aCGcGCgUAGCACCGGC--ACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 3541 0.71 0.374054
Target:  5'- cGCGCGCA-CGUGGCacc-GACAGCg -3'
miRNA:   3'- aCGCGCGUaGCACCGgcacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 54791 0.7 0.455885
Target:  5'- gGUGCGCggCGUGGCgggccugaaugaCGUuGAUAGCCg -3'
miRNA:   3'- aCGCGCGuaGCACCG------------GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 4773 0.69 0.476336
Target:  5'- cGUGCGCGUCGccagcaagcgccucgGcGCgGUGGcCGACCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------C-CGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 30211 0.66 0.663279
Target:  5'- cGCGCGCGUCGaugcucGGCgcgaCGUGGcccuCGGCg -3'
miRNA:   3'- aCGCGCGUAGCa-----CCG----GCACCu---GUUGg -5'
19122 3' -57.1 NC_004684.1 + 57416 0.67 0.631234
Target:  5'- aUGCcgaGCGCGUCGaaGGCCuccaugaccGUGG-CGACCc -3'
miRNA:   3'- -ACG---CGCGUAGCa-CCGG---------CACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 19065 0.68 0.577953
Target:  5'- aGCGCGCucaaCG-GuGCCcUGGACAGCg -3'
miRNA:   3'- aCGCGCGua--GCaC-CGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 63177 0.67 0.609859
Target:  5'- gGCGCauGCAgUCGUGGCUGgcGGugAucagaACCa -3'
miRNA:   3'- aCGCG--CGU-AGCACCGGCa-CCugU-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 546 0.67 0.631234
Target:  5'- aGCGCG-GUCGaGGCCGccaccgaggaGGACAagGCCg -3'
miRNA:   3'- aCGCGCgUAGCaCCGGCa---------CCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 22365 0.7 0.436856
Target:  5'- gGCG-GCGgucgCGcUGGCgGUGGACGugCa -3'
miRNA:   3'- aCGCgCGUa---GC-ACCGgCACCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 6846 0.67 0.609859
Target:  5'- gGCGCGaagggCGacGCCGUGGugGugCu -3'
miRNA:   3'- aCGCGCgua--GCacCGGCACCugUugG- -5'
19122 3' -57.1 NC_004684.1 + 44477 0.67 0.609859
Target:  5'- cUGCGUGCG-CGUGGaccaCCG-GGACAGg- -3'
miRNA:   3'- -ACGCGCGUaGCACC----GGCaCCUGUUgg -5'
19122 3' -57.1 NC_004684.1 + 63526 0.67 0.620542
Target:  5'- gGCGuCGCAgcUCGcGGgCGUGGcgcuCGGCCu -3'
miRNA:   3'- aCGC-GCGU--AGCaCCgGCACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 42522 0.67 0.620542
Target:  5'- gGCGCGC-UCaccGCCGUGGuCGGCg -3'
miRNA:   3'- aCGCGCGuAGcacCGGCACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 41991 0.7 0.418291
Target:  5'- -cCGCGCG--GUGGCCGcUGGcgACAACCu -3'
miRNA:   3'- acGCGCGUagCACCGGC-ACC--UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 64292 0.71 0.409191
Target:  5'- cGCGCGCAgugCGcccUGGCCGUcguGGugGuugaacACCg -3'
miRNA:   3'- aCGCGCGUa--GC---ACCGGCA---CCugU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 52735 0.67 0.609859
Target:  5'- gGCGCuGUccuccaggucGUCGUGGCCGcUGGcGCAGUCg -3'
miRNA:   3'- aCGCG-CG----------UAGCACCGGC-ACC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 14380 0.73 0.310149
Target:  5'- aGCGCGC-UgGUGGCgcUGGACGACg -3'
miRNA:   3'- aCGCGCGuAgCACCGgcACCUGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.