miRNA display CGI


Results 81 - 100 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 22703 0.71 0.382645
Target:  5'- gGCgGCGCAggaCGUggccaaGGCCGUGGcuggcacgcGCGACCg -3'
miRNA:   3'- aCG-CGCGUa--GCA------CCGGCACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 14380 0.73 0.310149
Target:  5'- aGCGCGC-UgGUGGCgcUGGACGACg -3'
miRNA:   3'- aCGCGCGuAgCACCGgcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 57970 0.73 0.281452
Target:  5'- gGUGCGCA-CGcugcUGGCCGaGGACAugACCa -3'
miRNA:   3'- aCGCGCGUaGC----ACCGGCaCCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 16791 0.74 0.274615
Target:  5'- gUGCgGCGCGUCGU-GUgGUGGGCGcGCCa -3'
miRNA:   3'- -ACG-CGCGUAGCAcCGgCACCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 40706 0.75 0.224645
Target:  5'- aGCuGgGCGgcgGUGGCCG-GGACGACCa -3'
miRNA:   3'- aCG-CgCGUag-CACCGGCaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 10599 0.68 0.545382
Target:  5'- gGCGCGCGagGUGcgcaacugccguuGCCGUauGGGCGugCu -3'
miRNA:   3'- aCGCGCGUagCAC-------------CGGCA--CCUGUugG- -5'
19122 3' -57.1 NC_004684.1 + 6216 0.68 0.546425
Target:  5'- gGCGCG-AUCucGGCCagcUGGGCGGCCa -3'
miRNA:   3'- aCGCGCgUAGcaCCGGc--ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 40514 0.68 0.55688
Target:  5'- uUGaCGCGCAcgcccaggUUGUcGGCgGUGG-CGACCu -3'
miRNA:   3'- -AC-GCGCGU--------AGCA-CCGgCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 63526 0.67 0.620542
Target:  5'- gGCGuCGCAgcUCGcGGgCGUGGcgcuCGGCCu -3'
miRNA:   3'- aCGC-GCGU--AGCaCCgGCACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 40098 0.67 0.620542
Target:  5'- aGCG-GCcgaucUCGUGGCCGUagcGGGCGcuggcgGCCu -3'
miRNA:   3'- aCGCgCGu----AGCACCGGCA---CCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 52735 0.67 0.609859
Target:  5'- gGCGCuGUccuccaggucGUCGUGGCCGcUGGcGCAGUCg -3'
miRNA:   3'- aCGCG-CG----------UAGCACCGGC-ACC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 44477 0.67 0.609859
Target:  5'- cUGCGUGCG-CGUGGaccaCCG-GGACAGg- -3'
miRNA:   3'- -ACGCGCGUaGCACC----GGCaCCUGUUgg -5'
19122 3' -57.1 NC_004684.1 + 6846 0.67 0.609859
Target:  5'- gGCGCGaagggCGacGCCGUGGugGugCu -3'
miRNA:   3'- aCGCGCgua--GCacCGGCACCugUugG- -5'
19122 3' -57.1 NC_004684.1 + 4466 0.67 0.609859
Target:  5'- cGUGCGCG-CGaGGCCGUcGuuGGCCg -3'
miRNA:   3'- aCGCGCGUaGCaCCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 59948 0.67 0.606658
Target:  5'- cGUGCGCGUUGUGcuggcggcgcucguGCCGcacccGGACcuuGCCg -3'
miRNA:   3'- aCGCGCGUAGCAC--------------CGGCa----CCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 3830 0.67 0.599195
Target:  5'- gGCGCGUucggCGU-GCCGaccGACGACCa -3'
miRNA:   3'- aCGCGCGua--GCAcCGGCac-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13671 0.67 0.599195
Target:  5'- gGCGCacgguccagGaCAUgGUGGCCGguucGGGCAcGCCg -3'
miRNA:   3'- aCGCG---------C-GUAgCACCGGCa---CCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 4142 0.67 0.588557
Target:  5'- --aGCGCAUCGgcgcGGacaCCGUGGACGcgaucaugGCCc -3'
miRNA:   3'- acgCGCGUAGCa---CC---GGCACCUGU--------UGG- -5'
19122 3' -57.1 NC_004684.1 + 58101 0.68 0.577953
Target:  5'- aGCGCGCcgagCaUGGCCG-GGuccgcgaacaacGCGACCg -3'
miRNA:   3'- aCGCGCGua--GcACCGGCaCC------------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54298 0.68 0.576895
Target:  5'- gUGCGCGCAUCGgcccccuUGGCgGcuGACAuuCCg -3'
miRNA:   3'- -ACGCGCGUAGC-------ACCGgCacCUGUu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.