miRNA display CGI


Results 101 - 120 of 159 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 3830 0.67 0.599195
Target:  5'- gGCGCGUucggCGU-GCCGaccGACGACCa -3'
miRNA:   3'- aCGCGCGua--GCAcCGGCac-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13671 0.67 0.599195
Target:  5'- gGCGCacgguccagGaCAUgGUGGCCGguucGGGCAcGCCg -3'
miRNA:   3'- aCGCG---------C-GUAgCACCGGCa---CCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 4142 0.67 0.588557
Target:  5'- --aGCGCAUCGgcgcGGacaCCGUGGACGcgaucaugGCCc -3'
miRNA:   3'- acgCGCGUAGCa---CC---GGCACCUGU--------UGG- -5'
19122 3' -57.1 NC_004684.1 + 58101 0.68 0.577953
Target:  5'- aGCGCGCcgagCaUGGCCG-GGuccgcgaacaacGCGACCg -3'
miRNA:   3'- aCGCGCGua--GcACCGGCaCC------------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 54298 0.68 0.576895
Target:  5'- gUGCGCGCAUCGgcccccuUGGCgGcuGACAuuCCg -3'
miRNA:   3'- -ACGCGCGUAGC-------ACCGgCacCUGUu-GG- -5'
19122 3' -57.1 NC_004684.1 + 47628 0.69 0.525711
Target:  5'- -uCG-GCGUCGgccuuGUCGUGGACGGCCa -3'
miRNA:   3'- acGCgCGUAGCac---CGGCACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27795 0.69 0.515466
Target:  5'- gGUGCGCGgcgguUCGguccUGGCCugcuccugGUGGGCGACUc -3'
miRNA:   3'- aCGCGCGU-----AGC----ACCGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 5721 0.66 0.705574
Target:  5'- cGCGcCGCAgaugcCGUucGCCauccacaaGUGGACGGCCa -3'
miRNA:   3'- aCGC-GCGUa----GCAc-CGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65708 0.66 0.695076
Target:  5'- aUGCGCGCcagcucGGCCugGUGGGCGaaaaacGCCa -3'
miRNA:   3'- -ACGCGCGuagca-CCGG--CACCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 38872 0.66 0.695076
Target:  5'- cGCGCGguUCaacGCCGccacgcUGGACAGCg -3'
miRNA:   3'- aCGCGCguAGcacCGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 10233 0.66 0.695076
Target:  5'- gGUGCGCGagcaGcUGGCCGUgcgcguggagcGGGcCAACCa -3'
miRNA:   3'- aCGCGCGUag--C-ACCGGCA-----------CCU-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 2403 0.66 0.695076
Target:  5'- gGCGUGCAcgUCGUGGCacCGUuccagaccgGcGACAagGCCg -3'
miRNA:   3'- aCGCGCGU--AGCACCG--GCA---------C-CUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 50015 0.66 0.690861
Target:  5'- gUGUGCGCAccgucggcggcagCGUGGCCGgugccUGGcuccaGGCCa -3'
miRNA:   3'- -ACGCGCGUa------------GCACCGGC-----ACCug---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 49544 0.66 0.684521
Target:  5'- gUGUGCGCG--GUGGCCGacuucGGGCuggcguGGCCu -3'
miRNA:   3'- -ACGCGCGUagCACCGGCa----CCUG------UUGG- -5'
19122 3' -57.1 NC_004684.1 + 25308 0.66 0.684521
Target:  5'- gGCgGCGguUCGUcGGCCcUGGcggcguaugGCGGCCu -3'
miRNA:   3'- aCG-CGCguAGCA-CCGGcACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13167 0.69 0.525711
Target:  5'- gUGaCGCGCA-CcUGGUCcaGGACAGCCa -3'
miRNA:   3'- -AC-GCGCGUaGcACCGGcaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65894 0.69 0.495224
Target:  5'- gGCGCGCAgguUGGCCaccaGGGCcGCCg -3'
miRNA:   3'- aCGCGCGUagcACCGGca--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 35634 0.69 0.505301
Target:  5'- -cCGCGCGUgGUGGCCGagucguuccUGGAguCGACa -3'
miRNA:   3'- acGCGCGUAgCACCGGC---------ACCU--GUUGg -5'
19122 3' -57.1 NC_004684.1 + 9200 0.69 0.515466
Target:  5'- uUGgGCGCAgugggcgCGUGaCCG-GGugGGCCa -3'
miRNA:   3'- -ACgCGCGUa------GCACcGGCaCCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20394 0.69 0.515466
Target:  5'- -aCGCGCA-CGaGGCCGaGGuCAGCCu -3'
miRNA:   3'- acGCGCGUaGCaCCGGCaCCuGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.