miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 21302 0.66 0.66328
Target:  5'- cUGCGCaacGCAggCGaGGCgGUGGuccggcGCGACCg -3'
miRNA:   3'- -ACGCG---CGUa-GCaCCGgCACC------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 7664 0.66 0.66328
Target:  5'- gGCGUGgAUCccgcucUGGCauugGGACAACCg -3'
miRNA:   3'- aCGCGCgUAGc-----ACCGgca-CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 30211 0.66 0.663279
Target:  5'- cGCGCGCGUCGaugcucGGCgcgaCGUGGcccuCGGCg -3'
miRNA:   3'- aCGCGCGUAGCa-----CCG----GCACCu---GUUGg -5'
19122 3' -57.1 NC_004684.1 + 5892 0.66 0.663279
Target:  5'- gGCGCGCAUCGaGcGCCGccgccUGcGCGGCg -3'
miRNA:   3'- aCGCGCGUAGCaC-CGGC-----ACcUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 19685 0.66 0.661148
Target:  5'- gGCGCgGCGgcaaggCcUGGCCGagccaagaccugGGACGGCCa -3'
miRNA:   3'- aCGCG-CGUa-----GcACCGGCa-----------CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 47129 0.66 0.652613
Target:  5'- cGUGCGCcUCgGUGGC-GUaGGCGGCCc -3'
miRNA:   3'- aCGCGCGuAG-CACCGgCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 18585 0.66 0.652613
Target:  5'- -cCGCGC-UgGUGGCUcUGGACGAUg -3'
miRNA:   3'- acGCGCGuAgCACCGGcACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 34839 0.66 0.652613
Target:  5'- cUGCuGCGCAUgca-GCCGUGGGCGguuCCg -3'
miRNA:   3'- -ACG-CGCGUAgcacCGGCACCUGUu--GG- -5'
19122 3' -57.1 NC_004684.1 + 42184 0.66 0.652613
Target:  5'- cUGCGCggugaGCAgUG-GGCCGUGGAgcuggUGGCCg -3'
miRNA:   3'- -ACGCG-----CGUaGCaCCGGCACCU-----GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21693 0.66 0.652612
Target:  5'- aUGUGCGaCAcCGUGGUCaUGGcuCGGCCu -3'
miRNA:   3'- -ACGCGC-GUaGCACCGGcACCu-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 23771 0.67 0.641928
Target:  5'- cGCGCuCGgccacacCGUGGCCG-GGcuguucaccGCAACCg -3'
miRNA:   3'- aCGCGcGUa------GCACCGGCaCC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 39671 0.67 0.641928
Target:  5'- cGCGUGCcUCGUgcucgcgcucGGCCGccGaGAUGACCg -3'
miRNA:   3'- aCGCGCGuAGCA----------CCGGCa-C-CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 34873 0.67 0.641928
Target:  5'- uUGUGCGCGaCGUgaaGGCCuUGGcCAACg -3'
miRNA:   3'- -ACGCGCGUaGCA---CCGGcACCuGUUGg -5'
19122 3' -57.1 NC_004684.1 + 50312 0.67 0.641928
Target:  5'- cGCGUGCccaGUCGgugcgcccGGCCaggcGGGCGGCCu -3'
miRNA:   3'- aCGCGCG---UAGCa-------CCGGca--CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 20051 0.67 0.640859
Target:  5'- aGCGCggugaacGCGuUCGUGGCCGcgcucaagcUGGcguuCAACCc -3'
miRNA:   3'- aCGCG-------CGU-AGCACCGGC---------ACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66266 0.67 0.631235
Target:  5'- aGCGCgGCGUCGUc-CCaGcGGACGGCCa -3'
miRNA:   3'- aCGCG-CGUAGCAccGG-CaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 36419 0.67 0.631235
Target:  5'- aGCGCcacgGCuUCGUGGUgGacGACGACCc -3'
miRNA:   3'- aCGCG----CGuAGCACCGgCacCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 24606 0.67 0.631235
Target:  5'- --aGCGgA-CGUGGCgCGcaUGGGCGGCCa -3'
miRNA:   3'- acgCGCgUaGCACCG-GC--ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 61031 0.67 0.631234
Target:  5'- cGCGCaggcCAUCGccGCCGacaUGGACAACg -3'
miRNA:   3'- aCGCGc---GUAGCacCGGC---ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 546 0.67 0.631234
Target:  5'- aGCGCG-GUCGaGGCCGccaccgaggaGGACAagGCCg -3'
miRNA:   3'- aCGCGCgUAGCaCCGGCa---------CCUGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.