miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 11950 0.67 0.629045
Target:  5'- -uGGUCGcCAGC-CUGGCAccuGCGGCGCc -3'
miRNA:   3'- cuCCAGCcGUCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 19564 0.67 0.639875
Target:  5'- --cGUCaGGCGGguCCGACGAgcaGGCACg -3'
miRNA:   3'- cucCAG-CCGUCguGGCUGUUg--CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49707 0.67 0.617135
Target:  5'- cGGGcacgcgcUCGGCGGCGCgGcguucaaacuCAGCGGCACg -3'
miRNA:   3'- cUCC-------AGCCGUCGUGgCu---------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 10302 0.67 0.618217
Target:  5'- aGAGGUCGcCcGCACCGAUGugcGCGcCGCa -3'
miRNA:   3'- -CUCCAGCcGuCGUGGCUGU---UGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 40474 0.67 0.618217
Target:  5'- gGGGGucUCGGCGgucuGCGCCGAguGCGccaGCACc -3'
miRNA:   3'- -CUCC--AGCCGU----CGUGGCUguUGC---UGUG- -5'
19122 5' -56.2 NC_004684.1 + 52902 0.67 0.618217
Target:  5'- gGAGcGUcCGGcCAGCA-CGGCGGCGugGCc -3'
miRNA:   3'- -CUC-CA-GCC-GUCGUgGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 23715 0.67 0.629045
Target:  5'- uGGG-CGGCGGCgcgcucaacaucGCUGGCGGCG-CACu -3'
miRNA:   3'- cUCCaGCCGUCG------------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 59676 0.67 0.639875
Target:  5'- cAGGUggcucaCGGcCAGCGCC-ACGGCGACGg -3'
miRNA:   3'- cUCCA------GCC-GUCGUGGcUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 3567 0.67 0.639875
Target:  5'- aAGGUCGuGguGCGCC-ACAGCGGgGa -3'
miRNA:   3'- cUCCAGC-CguCGUGGcUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 25003 0.67 0.650699
Target:  5'- uGGGGUCGGCGGgGCCGAUugucucUGcCAUc -3'
miRNA:   3'- -CUCCAGCCGUCgUGGCUGuu----GCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 26863 0.67 0.650699
Target:  5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3'
miRNA:   3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 32053 0.67 0.672287
Target:  5'- cGA-GUCGGCGuugacGCACaCGGCGACG-CACc -3'
miRNA:   3'- -CUcCAGCCGU-----CGUG-GCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 28732 0.67 0.672287
Target:  5'- --cGUCuGCGGCACCGACGuGCGGUGCg -3'
miRNA:   3'- cucCAGcCGUCGUGGCUGU-UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 14320 0.67 0.672287
Target:  5'- aAGGUCGGUGGCaagaccaccGCUGACAucGCGuACAa -3'
miRNA:   3'- cUCCAGCCGUCG---------UGGCUGU--UGC-UGUg -5'
19122 5' -56.2 NC_004684.1 + 19601 0.67 0.672287
Target:  5'- -cGG-CGGCcgaGGUGCUGGCggUGACGCu -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18396 0.67 0.672287
Target:  5'- cGGGGUCGGgccCGGCcaGCagGGCAcCGACGCg -3'
miRNA:   3'- -CUCCAGCC---GUCG--UGg-CUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 34479 0.67 0.650699
Target:  5'- cAGGUC--CGGCACCGcCGAgGACACc -3'
miRNA:   3'- cUCCAGccGUCGUGGCuGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 1040 0.67 0.650699
Target:  5'- uGGGGccagaaaUGGCGGCACCGGuugugcuggcUGGCGGCGCu -3'
miRNA:   3'- -CUCCa------GCCGUCGUGGCU----------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49651 0.67 0.618217
Target:  5'- -cGGUUGGCcGCGCCGGauuccgGGCGAcCGCa -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUg-----UUGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 18777 0.67 0.629045
Target:  5'- aGAGG-CGcaCGGCACCGAgGugGGCAa -3'
miRNA:   3'- -CUCCaGCc-GUCGUGGCUgUugCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.