miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 6849 0.67 0.672287
Target:  5'- aGGGuGUCGaCGGCACCGGgcGCGGCGa -3'
miRNA:   3'- -CUC-CAGCcGUCGUGGCUguUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 48908 0.67 0.661506
Target:  5'- -cGGU-GGCGGUGCCGgACAcCGACAg -3'
miRNA:   3'- cuCCAgCCGUCGUGGC-UGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 36985 0.67 0.660427
Target:  5'- cAGGUguugccaCGGCAGCGCCGGgAugcGCGugGg -3'
miRNA:   3'- cUCCA-------GCCGUCGUGGCUgU---UGCugUg -5'
19122 5' -56.2 NC_004684.1 + 42712 0.67 0.658266
Target:  5'- -uGGUCGGCAGgccuggaaccucacCGCCGuCGGCGAaguGCa -3'
miRNA:   3'- cuCCAGCCGUC--------------GUGGCuGUUGCUg--UG- -5'
19122 5' -56.2 NC_004684.1 + 44948 0.67 0.618217
Target:  5'- cGGGaUCGccGCcGCGCCGACGGCGAUg- -3'
miRNA:   3'- cUCC-AGC--CGuCGUGGCUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 13124 0.67 0.633377
Target:  5'- cGGGU-GGCGGCGCUGGCugaggagcuguccCGGCGCg -3'
miRNA:   3'- cUCCAgCCGUCGUGGCUGuu-----------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 62909 0.67 0.629045
Target:  5'- cGGGGUuaCGGUAGCgGCCaACGACGGCcucGCg -3'
miRNA:   3'- -CUCCA--GCCGUCG-UGGcUGUUGCUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 19564 0.67 0.639875
Target:  5'- --cGUCaGGCGGguCCGACGAgcaGGCACg -3'
miRNA:   3'- cucCAG-CCGUCguGGCUGUUg--CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 7817 0.67 0.639875
Target:  5'- -uGGUgCGGCugauggacauGCGCuggugCGACAACGGCGCg -3'
miRNA:   3'- cuCCA-GCCGu---------CGUG-----GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 59676 0.67 0.639875
Target:  5'- cAGGUggcucaCGGcCAGCGCC-ACGGCGACGg -3'
miRNA:   3'- cUCCA------GCC-GUCGUGGcUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 26863 0.67 0.650699
Target:  5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3'
miRNA:   3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 25003 0.67 0.650699
Target:  5'- uGGGGUCGGCGGgGCCGAUugucucUGcCAUc -3'
miRNA:   3'- -CUCCAGCCGUCgUGGCUGuu----GCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 18525 0.68 0.585839
Target:  5'- -cGGUcaaCGGCaaGGuCACCGACAacaucgacuACGACGCg -3'
miRNA:   3'- cuCCA---GCCG--UC-GUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 33476 0.68 0.607401
Target:  5'- -cGG-CGGCGGCugCGguggacGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCGUCGugGC------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 9368 0.68 0.607401
Target:  5'- cGAGGagcCGGa--CACCGAgGACGACGCc -3'
miRNA:   3'- -CUCCa--GCCgucGUGGCUgUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 39407 0.68 0.607401
Target:  5'- cGGGuGUCGGCAGUuugauACgCGACAAgGAC-Cg -3'
miRNA:   3'- -CUC-CAGCCGUCG-----UG-GCUGUUgCUGuG- -5'
19122 5' -56.2 NC_004684.1 + 9925 0.68 0.596605
Target:  5'- -cGGUgGGCAGgACCGGCAGuuugucgggaGACAUg -3'
miRNA:   3'- cuCCAgCCGUCgUGGCUGUUg---------CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 21479 0.68 0.600921
Target:  5'- cGAGGUguucaacgcgcCGGUcaagcaugaggacaaGGCACCGGCcauCGACACc -3'
miRNA:   3'- -CUCCA-----------GCCG---------------UCGUGGCUGuu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 40128 0.68 0.596605
Target:  5'- -uGG-CGGCcucGGCACCGACcuCGGCGa -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 17240 0.68 0.59445
Target:  5'- cAGGUgcugacgaaaugaCGGCGGCGCUGGuccugcaacugcuCGGCGGCGCu -3'
miRNA:   3'- cUCCA-------------GCCGUCGUGGCU-------------GUUGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.