miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 32274 0.68 0.584765
Target:  5'- -cGGUCGGCGaagagguGCAUUGGCGcuCGGCGCu -3'
miRNA:   3'- cuCCAGCCGU-------CGUGGCUGUu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 17240 0.68 0.59445
Target:  5'- cAGGUgcugacgaaaugaCGGCGGCGCUGGuccugcaacugcuCGGCGGCGCu -3'
miRNA:   3'- cUCCA-------------GCCGUCGUGGCU-------------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18525 0.68 0.585839
Target:  5'- -cGGUcaaCGGCaaGGuCACCGACAacaucgacuACGACGCg -3'
miRNA:   3'- cuCCA---GCCG--UC-GUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 19818 0.68 0.596605
Target:  5'- gGAGuUCGuCAGCGCgugUGACGGCGGCGCa -3'
miRNA:   3'- -CUCcAGCcGUCGUG---GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25034 0.68 0.575111
Target:  5'- -uGGa-GGCGGCAUCGACGugG-CGCa -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 2929 0.68 0.575111
Target:  5'- cGAGGUgccucCGGUgccgAGCACCGAggcCAuCGGCGCg -3'
miRNA:   3'- -CUCCA-----GCCG----UCGUGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 36264 0.68 0.564427
Target:  5'- uGAGGUgucCGGCGGC-CUGGCcaagAACGAgGCg -3'
miRNA:   3'- -CUCCA---GCCGUCGuGGCUG----UUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 20778 0.68 0.564427
Target:  5'- gGAGG-CGGUGGCcCCGAagcCAcCGGCACg -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 21479 0.68 0.600921
Target:  5'- cGAGGUguucaacgcgcCGGUcaagcaugaggacaaGGCACCGGCcauCGACACc -3'
miRNA:   3'- -CUCCA-----------GCCG---------------UCGUGGCUGuu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 39407 0.68 0.607401
Target:  5'- cGGGuGUCGGCAGUuugauACgCGACAAgGAC-Cg -3'
miRNA:   3'- -CUC-CAGCCGUCG-----UG-GCUGUUgCUGuG- -5'
19122 5' -56.2 NC_004684.1 + 9368 0.68 0.607401
Target:  5'- cGAGGagcCGGa--CACCGAgGACGACGCc -3'
miRNA:   3'- -CUCCa--GCCgucGUGGCUgUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 33476 0.68 0.607401
Target:  5'- -cGG-CGGCGGCugCGguggacGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCGUCGugGC------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 40128 0.68 0.596605
Target:  5'- -uGG-CGGCcucGGCACCGACcuCGGCGa -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 33790 0.69 0.508857
Target:  5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3'
miRNA:   3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8911 0.69 0.511945
Target:  5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3'
miRNA:   3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 6410 0.69 0.511945
Target:  5'- cGAGGuguacagcUCGGCGGCGgCGugAACGccuuCGCg -3'
miRNA:   3'- -CUCC--------AGCCGUCGUgGCugUUGCu---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.