miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 39132 0.69 0.522295
Target:  5'- cGGGGUCGGCAaccuGCACaaccucuaCGuCAACGGCGa -3'
miRNA:   3'- -CUCCAGCCGU----CGUG--------GCuGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 46740 0.69 0.543227
Target:  5'- uGAGG-CGGCGGUauuguccagcguGCgGACGcagGCGGCGCa -3'
miRNA:   3'- -CUCCaGCCGUCG------------UGgCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26364 0.69 0.532724
Target:  5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3'
miRNA:   3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 12791 0.69 0.532724
Target:  5'- cGAGGacaaCGGCAccccCGCCGACGACG-CGCc -3'
miRNA:   3'- -CUCCa---GCCGUc---GUGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 26430 0.69 0.552737
Target:  5'- cGGGGUucgccgcCGGUGGC-CCGguguACGGCGGCACg -3'
miRNA:   3'- -CUCCA-------GCCGUCGuGGC----UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57764 0.69 0.522295
Target:  5'- -cGGUCaGGCGGUcuaCGACAcCGACACc -3'
miRNA:   3'- cuCCAG-CCGUCGug-GCUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 43444 0.69 0.501682
Target:  5'- cGAGGUCGGUgcggcgGGCGCgGcagcagguGCGGCGGCAg -3'
miRNA:   3'- -CUCCAGCCG------UCGUGgC--------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 28869 0.69 0.553797
Target:  5'- -cGGUCGGCAuagugggaaCACCGA--ACGGCGCg -3'
miRNA:   3'- cuCCAGCCGUc--------GUGGCUguUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 8114 0.69 0.553797
Target:  5'- ----cCGGCAGCAUUGACGAgGACGa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8911 0.69 0.511945
Target:  5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3'
miRNA:   3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 18034 0.69 0.553797
Target:  5'- gGAGGUcuggacCGGCGGCGaaGGCGAgGACGa -3'
miRNA:   3'- -CUCCA------GCCGUCGUggCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 33790 0.69 0.508857
Target:  5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3'
miRNA:   3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 49055 0.7 0.442186
Target:  5'- -cGGUCGGCuccgggggcGGCACCGGCGuGCGGaACa -3'
miRNA:   3'- cuCCAGCCG---------UCGUGGCUGU-UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 7430 0.7 0.471459
Target:  5'- cGGGUgCGGCacgAGCGCCGccagcACAACGcGCACg -3'
miRNA:   3'- cUCCA-GCCG---UCGUGGC-----UGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 46329 0.7 0.491509
Target:  5'- cAGGUgccCGGuCAGCACCGGCAccCGuGCACg -3'
miRNA:   3'- cUCCA---GCC-GUCGUGGCUGUu-GC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 27264 0.7 0.471459
Target:  5'- cGAGGUCGGUgccgaggccgccAGCGCCcGCuACGGcCACg -3'
miRNA:   3'- -CUCCAGCCG------------UCGUGGcUGuUGCU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.