Results 61 - 80 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19122 | 5' | -56.2 | NC_004684.1 | + | 11985 | 0.69 | 0.511945 |
Target: 5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3' miRNA: 3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 6410 | 0.69 | 0.511945 |
Target: 5'- cGAGGuguacagcUCGGCGGCGgCGugAACGccuuCGCg -3' miRNA: 3'- -CUCC--------AGCCGUCGUgGCugUUGCu---GUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 8911 | 0.69 | 0.511945 |
Target: 5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3' miRNA: 3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 33790 | 0.69 | 0.508857 |
Target: 5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3' miRNA: 3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 8114 | 0.69 | 0.553797 |
Target: 5'- ----cCGGCAGCAUUGACGAgGACGa -3' miRNA: 3'- cuccaGCCGUCGUGGCUGUUgCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 18034 | 0.69 | 0.553797 |
Target: 5'- gGAGGUcuggacCGGCGGCGaaGGCGAgGACGa -3' miRNA: 3'- -CUCCA------GCCGUCGUggCUGUUgCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 21751 | 0.69 | 0.505776 |
Target: 5'- -uGGUCGGCcGCGcgcugcgccuguuccCCGGCAAgacCGACGCg -3' miRNA: 3'- cuCCAGCCGuCGU---------------GGCUGUU---GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 19818 | 0.68 | 0.596605 |
Target: 5'- gGAGuUCGuCAGCGCgugUGACGGCGGCGCa -3' miRNA: 3'- -CUCcAGCcGUCGUG---GCUGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 9368 | 0.68 | 0.607401 |
Target: 5'- cGAGGagcCGGa--CACCGAgGACGACGCc -3' miRNA: 3'- -CUCCa--GCCgucGUGGCUgUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 33476 | 0.68 | 0.607401 |
Target: 5'- -cGG-CGGCGGCugCGguggacGCGGCGGCGg -3' miRNA: 3'- cuCCaGCCGUCGugGC------UGUUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 40128 | 0.68 | 0.596605 |
Target: 5'- -uGG-CGGCcucGGCACCGACcuCGGCGa -3' miRNA: 3'- cuCCaGCCG---UCGUGGCUGuuGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 17240 | 0.68 | 0.59445 |
Target: 5'- cAGGUgcugacgaaaugaCGGCGGCGCUGGuccugcaacugcuCGGCGGCGCu -3' miRNA: 3'- cUCCA-------------GCCGUCGUGGCU-------------GUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 18525 | 0.68 | 0.585839 |
Target: 5'- -cGGUcaaCGGCaaGGuCACCGACAacaucgacuACGACGCg -3' miRNA: 3'- cuCCA---GCCG--UC-GUGGCUGU---------UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 39407 | 0.68 | 0.607401 |
Target: 5'- cGGGuGUCGGCAGUuugauACgCGACAAgGAC-Cg -3' miRNA: 3'- -CUC-CAGCCGUCG-----UG-GCUGUUgCUGuG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 32274 | 0.68 | 0.584765 |
Target: 5'- -cGGUCGGCGaagagguGCAUUGGCGcuCGGCGCu -3' miRNA: 3'- cuCCAGCCGU-------CGUGGCUGUu-GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25034 | 0.68 | 0.575111 |
Target: 5'- -uGGa-GGCGGCAUCGACGugG-CGCa -3' miRNA: 3'- cuCCagCCGUCGUGGCUGUugCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 2929 | 0.68 | 0.575111 |
Target: 5'- cGAGGUgccucCGGUgccgAGCACCGAggcCAuCGGCGCg -3' miRNA: 3'- -CUCCA-----GCCG----UCGUGGCU---GUuGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 36264 | 0.68 | 0.564427 |
Target: 5'- uGAGGUgucCGGCGGC-CUGGCcaagAACGAgGCg -3' miRNA: 3'- -CUCCA---GCCGUCGuGGCUG----UUGCUgUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 20778 | 0.68 | 0.564427 |
Target: 5'- gGAGG-CGGUGGCcCCGAagcCAcCGGCACg -3' miRNA: 3'- -CUCCaGCCGUCGuGGCU---GUuGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 21479 | 0.68 | 0.600921 |
Target: 5'- cGAGGUguucaacgcgcCGGUcaagcaugaggacaaGGCACCGGCcauCGACACc -3' miRNA: 3'- -CUCCA-----------GCCG---------------UCGUGGCUGuu-GCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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