miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 25065 0.7 0.481433
Target:  5'- aAGuUCGcGC-GCACCGGCAACGugGCc -3'
miRNA:   3'- cUCcAGC-CGuCGUGGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 15754 0.7 0.481433
Target:  5'- -cGGcCaGCAGCugCG-CAGCGGCACc -3'
miRNA:   3'- cuCCaGcCGUCGugGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 7662 0.7 0.491509
Target:  5'- cGGGUCGGCGGCcuaCGuCGugGAuCGCa -3'
miRNA:   3'- cUCCAGCCGUCGug-GCuGUugCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 46329 0.7 0.491509
Target:  5'- cAGGUgccCGGuCAGCACCGGCAccCGuGCACg -3'
miRNA:   3'- cUCCA---GCC-GUCGUGGCUGUu-GC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 43444 0.69 0.501682
Target:  5'- cGAGGUCGGUgcggcgGGCGCgGcagcagguGCGGCGGCAg -3'
miRNA:   3'- -CUCCAGCCG------UCGUGgC--------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 57541 0.69 0.501682
Target:  5'- -cGG-CGGCAGCucACCGGCGGCGGu-- -3'
miRNA:   3'- cuCCaGCCGUCG--UGGCUGUUGCUgug -5'
19122 5' -56.2 NC_004684.1 + 21751 0.69 0.505776
Target:  5'- -uGGUCGGCcGCGcgcugcgccuguuccCCGGCAAgacCGACGCg -3'
miRNA:   3'- cuCCAGCCGuCGU---------------GGCUGUU---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 33790 0.69 0.508857
Target:  5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3'
miRNA:   3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8911 0.69 0.511945
Target:  5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3'
miRNA:   3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 6410 0.69 0.511945
Target:  5'- cGAGGuguacagcUCGGCGGCGgCGugAACGccuuCGCg -3'
miRNA:   3'- -CUCC--------AGCCGUCGUgGCugUUGCu---GUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 30518 0.69 0.522295
Target:  5'- uGGGGUCGGUgaAGUucACCGcCGACGGCu- -3'
miRNA:   3'- -CUCCAGCCG--UCG--UGGCuGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 55559 0.69 0.522295
Target:  5'- cGAaGUCGcGcCAGuCGCCgGACAGCGGCGCg -3'
miRNA:   3'- -CUcCAGC-C-GUC-GUGG-CUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57764 0.69 0.522295
Target:  5'- -cGGUCaGGCGGUcuaCGACAcCGACACc -3'
miRNA:   3'- cuCCAG-CCGUCGug-GCUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 39132 0.69 0.522295
Target:  5'- cGGGGUCGGCAaccuGCACaaccucuaCGuCAACGGCGa -3'
miRNA:   3'- -CUCCAGCCGU----CGUG--------GCuGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 53539 0.69 0.526457
Target:  5'- cAGGUCGGC-GCggaugaccucggagaACC-ACGACGGCGCa -3'
miRNA:   3'- cUCCAGCCGuCG---------------UGGcUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26364 0.69 0.532724
Target:  5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3'
miRNA:   3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.