miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 26364 0.69 0.532724
Target:  5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3'
miRNA:   3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 25939 0.69 0.532724
Target:  5'- cGGGGUCaGCc-CACUGACAccgGCGGCACc -3'
miRNA:   3'- -CUCCAGcCGucGUGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 46740 0.69 0.543227
Target:  5'- uGAGG-CGGCGGUauuguccagcguGCgGACGcagGCGGCGCa -3'
miRNA:   3'- -CUCCaGCCGUCG------------UGgCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26430 0.69 0.552737
Target:  5'- cGGGGUucgccgcCGGUGGC-CCGguguACGGCGGCACg -3'
miRNA:   3'- -CUCCA-------GCCGUCGuGGC----UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18034 0.69 0.553797
Target:  5'- gGAGGUcuggacCGGCGGCGaaGGCGAgGACGa -3'
miRNA:   3'- -CUCCA------GCCGUCGUggCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 28869 0.69 0.553797
Target:  5'- -cGGUCGGCAuagugggaaCACCGA--ACGGCGCg -3'
miRNA:   3'- cuCCAGCCGUc--------GUGGCUguUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 8114 0.69 0.553797
Target:  5'- ----cCGGCAGCAUUGACGAgGACGa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 36264 0.68 0.564427
Target:  5'- uGAGGUgucCGGCGGC-CUGGCcaagAACGAgGCg -3'
miRNA:   3'- -CUCCA---GCCGUCGuGGCUG----UUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 33755 0.68 0.564427
Target:  5'- aGGGGUCgcugacgaGGUAGCcgcCCGACGAucCGGCGCu -3'
miRNA:   3'- -CUCCAG--------CCGUCGu--GGCUGUU--GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 20778 0.68 0.564427
Target:  5'- gGAGG-CGGUGGCcCCGAagcCAcCGGCACg -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 16246 0.68 0.575111
Target:  5'- cGAGGagUCGGCGGCGCaGAUucguCGGCAg -3'
miRNA:   3'- -CUCC--AGCCGUCGUGgCUGuu--GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 43191 0.68 0.575111
Target:  5'- cGAuGUCGGgcaccgcaGGCACCGGCAuuuugggcgGCGGCACc -3'
miRNA:   3'- -CUcCAGCCg-------UCGUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 2929 0.68 0.575111
Target:  5'- cGAGGUgccucCGGUgccgAGCACCGAggcCAuCGGCGCg -3'
miRNA:   3'- -CUCCA-----GCCG----UCGUGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25034 0.68 0.575111
Target:  5'- -uGGa-GGCGGCAUCGACGugG-CGCa -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 32274 0.68 0.584765
Target:  5'- -cGGUCGGCGaagagguGCAUUGGCGcuCGGCGCu -3'
miRNA:   3'- cuCCAGCCGU-------CGUGGCUGUu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 64818 0.68 0.585839
Target:  5'- cGGGUCgGGCA-CACCGGCcuCGGCGa -3'
miRNA:   3'- cUCCAG-CCGUcGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18525 0.68 0.585839
Target:  5'- -cGGUcaaCGGCaaGGuCACCGACAacaucgacuACGACGCg -3'
miRNA:   3'- cuCCA---GCCG--UC-GUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 17240 0.68 0.59445
Target:  5'- cAGGUgcugacgaaaugaCGGCGGCGCUGGuccugcaacugcuCGGCGGCGCu -3'
miRNA:   3'- cUCCA-------------GCCGUCGUGGCU-------------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 40128 0.68 0.596605
Target:  5'- -uGG-CGGCcucGGCACCGACcuCGGCGa -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 19818 0.68 0.596605
Target:  5'- gGAGuUCGuCAGCGCgugUGACGGCGGCGCa -3'
miRNA:   3'- -CUCcAGCcGUCGUG---GCUGUUGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.