miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 19818 0.68 0.596605
Target:  5'- gGAGuUCGuCAGCGCgugUGACGGCGGCGCa -3'
miRNA:   3'- -CUCcAGCcGUCGUG---GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 54296 0.68 0.596605
Target:  5'- uGGGG-CGGCGuGCACCGcGCGAaccggGGCGCa -3'
miRNA:   3'- -CUCCaGCCGU-CGUGGC-UGUUg----CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 21479 0.68 0.600921
Target:  5'- cGAGGUguucaacgcgcCGGUcaagcaugaggacaaGGCACCGGCcauCGACACc -3'
miRNA:   3'- -CUCCA-----------GCCG---------------UCGUGGCUGuu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 58768 0.68 0.600921
Target:  5'- cGAGGaUCGGCGGUGCCGGugcaccgggcuuguuCGAggccacCGGCGCg -3'
miRNA:   3'- -CUCC-AGCCGUCGUGGCU---------------GUU------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 3531 0.68 0.607401
Target:  5'- aAGGcCGccacgcgcgcacGUGGCACCGACAGCGuGCGCc -3'
miRNA:   3'- cUCCaGC------------CGUCGUGGCUGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 39407 0.68 0.607401
Target:  5'- cGGGuGUCGGCAGUuugauACgCGACAAgGAC-Cg -3'
miRNA:   3'- -CUC-CAGCCGUCG-----UG-GCUGUUgCUGuG- -5'
19122 5' -56.2 NC_004684.1 + 33476 0.68 0.607401
Target:  5'- -cGG-CGGCGGCugCGguggacGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCGUCGugGC------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 9368 0.68 0.607401
Target:  5'- cGAGGagcCGGa--CACCGAgGACGACGCc -3'
miRNA:   3'- -CUCCa--GCCgucGUGGCUgUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49707 0.67 0.617135
Target:  5'- cGGGcacgcgcUCGGCGGCGCgGcguucaaacuCAGCGGCACg -3'
miRNA:   3'- cUCC-------AGCCGUCGUGgCu---------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 40474 0.67 0.618217
Target:  5'- gGGGGucUCGGCGgucuGCGCCGAguGCGccaGCACc -3'
miRNA:   3'- -CUCC--AGCCGU----CGUGGCUguUGC---UGUG- -5'
19122 5' -56.2 NC_004684.1 + 52902 0.67 0.618217
Target:  5'- gGAGcGUcCGGcCAGCA-CGGCGGCGugGCc -3'
miRNA:   3'- -CUC-CA-GCC-GUCGUgGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 44948 0.67 0.618217
Target:  5'- cGGGaUCGccGCcGCGCCGACGGCGAUg- -3'
miRNA:   3'- cUCC-AGC--CGuCGUGGCUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 10302 0.67 0.618217
Target:  5'- aGAGGUCGcCcGCACCGAUGugcGCGcCGCa -3'
miRNA:   3'- -CUCCAGCcGuCGUGGCUGU---UGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 49651 0.67 0.618217
Target:  5'- -cGGUUGGCcGCGCCGGauuccgGGCGAcCGCa -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUg-----UUGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 18777 0.67 0.629045
Target:  5'- aGAGG-CGcaCGGCACCGAgGugGGCAa -3'
miRNA:   3'- -CUCCaGCc-GUCGUGGCUgUugCUGUg -5'
19122 5' -56.2 NC_004684.1 + 62909 0.67 0.629045
Target:  5'- cGGGGUuaCGGUAGCgGCCaACGACGGCcucGCg -3'
miRNA:   3'- -CUCCA--GCCGUCG-UGGcUGUUGCUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 35511 0.67 0.629045
Target:  5'- uGAGGagcacCGGCGcuacuGCACCGAguGCgGGCACg -3'
miRNA:   3'- -CUCCa----GCCGU-----CGUGGCUguUG-CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 23715 0.67 0.629045
Target:  5'- uGGG-CGGCGGCgcgcucaacaucGCUGGCGGCG-CACu -3'
miRNA:   3'- cUCCaGCCGUCG------------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 11950 0.67 0.629045
Target:  5'- -uGGUCGcCAGC-CUGGCAccuGCGGCGCc -3'
miRNA:   3'- cuCCAGCcGUCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57060 0.67 0.629045
Target:  5'- cGGGGUCgauGGCGGcCugCGuu-GCGGCGCg -3'
miRNA:   3'- -CUCCAG---CCGUC-GugGCuguUGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.