miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 16014 0.71 0.40846
Target:  5'- cGGGGaCGGUGGCGuggucguugacgugcCCGGCGACGACGa -3'
miRNA:   3'- -CUCCaGCCGUCGU---------------GGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 16246 0.68 0.575111
Target:  5'- cGAGGagUCGGCGGCGCaGAUucguCGGCAg -3'
miRNA:   3'- -CUCC--AGCCGUCGUGgCUGuu--GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 16341 0.67 0.661506
Target:  5'- cGAGGagCGGCuGGCGCUGGC--CGACAa -3'
miRNA:   3'- -CUCCa-GCCG-UCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 17240 0.68 0.59445
Target:  5'- cAGGUgcugacgaaaugaCGGCGGCGCUGGuccugcaacugcuCGGCGGCGCu -3'
miRNA:   3'- cUCCA-------------GCCGUCGUGGCU-------------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 17992 0.66 0.724385
Target:  5'- cAGGU-GGUGGCGCUGACcgaguacGGCGGCAa -3'
miRNA:   3'- cUCCAgCCGUCGUGGCUG-------UUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18034 0.69 0.553797
Target:  5'- gGAGGUcuggacCGGCGGCGaaGGCGAgGACGa -3'
miRNA:   3'- -CUCCA------GCCGUCGUggCUGUUgCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18117 0.71 0.395785
Target:  5'- cGAGGcCGGUguGGaCACCGccaACAugGACGCg -3'
miRNA:   3'- -CUCCaGCCG--UC-GUGGC---UGUugCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18314 0.74 0.276716
Target:  5'- -cGGUUGGCGGCGaCGugGGCGACGa -3'
miRNA:   3'- cuCCAGCCGUCGUgGCugUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18396 0.67 0.672287
Target:  5'- cGGGGUCGGgccCGGCcaGCagGGCAcCGACGCg -3'
miRNA:   3'- -CUCCAGCC---GUCG--UGg-CUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18418 0.66 0.683031
Target:  5'- -cGGccCGGCGggcGCACCGGCGGcCGACGu -3'
miRNA:   3'- cuCCa-GCCGU---CGUGGCUGUU-GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18525 0.68 0.585839
Target:  5'- -cGGUcaaCGGCaaGGuCACCGACAacaucgacuACGACGCg -3'
miRNA:   3'- cuCCA---GCCG--UC-GUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18777 0.67 0.629045
Target:  5'- aGAGG-CGcaCGGCACCGAgGugGGCAa -3'
miRNA:   3'- -CUCCaGCc-GUCGUGGCUgUugCUGUg -5'
19122 5' -56.2 NC_004684.1 + 19564 0.67 0.639875
Target:  5'- --cGUCaGGCGGguCCGACGAgcaGGCACg -3'
miRNA:   3'- cucCAG-CCGUCguGGCUGUUg--CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 19601 0.67 0.672287
Target:  5'- -cGG-CGGCcgaGGUGCUGGCggUGACGCu -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 19818 0.68 0.596605
Target:  5'- gGAGuUCGuCAGCGCgugUGACGGCGGCGCa -3'
miRNA:   3'- -CUCcAGCcGUCGUG---GCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 20778 0.68 0.564427
Target:  5'- gGAGG-CGGUGGCcCCGAagcCAcCGGCACg -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCU---GUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 20977 0.66 0.72543
Target:  5'- -cGGagCGGCGGCGcaggucggcCCGAUccuGCGGCGCa -3'
miRNA:   3'- cuCCa-GCCGUCGU---------GGCUGu--UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 21479 0.68 0.600921
Target:  5'- cGAGGUguucaacgcgcCGGUcaagcaugaggacaaGGCACCGGCcauCGACACc -3'
miRNA:   3'- -CUCCA-----------GCCG---------------UCGUGGCUGuu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 21751 0.69 0.505776
Target:  5'- -uGGUCGGCcGCGcgcugcgccuguuccCCGGCAAgacCGACGCg -3'
miRNA:   3'- cuCCAGCCGuCGU---------------GGCUGUU---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 22300 0.66 0.714938
Target:  5'- -cGG-CGGCGGUGCCGAacccCGAUGCu -3'
miRNA:   3'- cuCCaGCCGUCGUGGCUguu-GCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.