miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 22348 0.72 0.361
Target:  5'- cAGG-CGGUGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cUCCaGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 23715 0.67 0.629045
Target:  5'- uGGG-CGGCGGCgcgcucaacaucGCUGGCGGCG-CACu -3'
miRNA:   3'- cUCCaGCCGUCG------------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 24106 0.67 0.639875
Target:  5'- aAGGUgCcGCAGC-CCGGCAcgcCGACGCa -3'
miRNA:   3'- cUCCA-GcCGUCGuGGCUGUu--GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 24759 0.75 0.225835
Target:  5'- -uGG-CGGCaccAGCACCGGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 24809 0.67 0.661506
Target:  5'- -cGGUCGGCAaCAUCGcGCAG-GACACc -3'
miRNA:   3'- cuCCAGCCGUcGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25003 0.67 0.650699
Target:  5'- uGGGGUCGGCGGgGCCGAUugucucUGcCAUc -3'
miRNA:   3'- -CUCCAGCCGUCgUGGCUGuu----GCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 25034 0.68 0.575111
Target:  5'- -uGGa-GGCGGCAUCGACGugG-CGCa -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 25065 0.7 0.481433
Target:  5'- aAGuUCGcGC-GCACCGGCAACGugGCc -3'
miRNA:   3'- cUCcAGC-CGuCGUGGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 25192 0.67 0.633377
Target:  5'- -uGGUUGGCcaGGCGCUGGCAccggguggcuucacCGGCACg -3'
miRNA:   3'- cuCCAGCCG--UCGUGGCUGUu-------------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25939 0.69 0.532724
Target:  5'- cGGGGUCaGCc-CACUGACAccgGCGGCACc -3'
miRNA:   3'- -CUCCAGcCGucGUGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26364 0.69 0.532724
Target:  5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3'
miRNA:   3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 26430 0.69 0.552737
Target:  5'- cGGGGUucgccgcCGGUGGC-CCGguguACGGCGGCACg -3'
miRNA:   3'- -CUCCA-------GCCGUCGuGGC----UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26611 0.7 0.451831
Target:  5'- -cGG-CGGCGGCgucAUCGcCAACGACACc -3'
miRNA:   3'- cuCCaGCCGUCG---UGGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26863 0.67 0.650699
Target:  5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3'
miRNA:   3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 27075 0.66 0.711775
Target:  5'- cGAGGUCGuGCcugccgGGCgcuacgccaucgacACCaACGACGGCGCg -3'
miRNA:   3'- -CUCCAGC-CG------UCG--------------UGGcUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 27264 0.7 0.471459
Target:  5'- cGAGGUCGGUgccgaggccgccAGCGCCcGCuACGGcCACg -3'
miRNA:   3'- -CUCCAGCCG------------UCGUGGcUGuUGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 27318 0.67 0.650699
Target:  5'- -cGGUgCGGcCAGCuuUGACGACGGCGg -3'
miRNA:   3'- cuCCA-GCC-GUCGugGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 28732 0.67 0.672287
Target:  5'- --cGUCuGCGGCACCGACGuGCGGUGCg -3'
miRNA:   3'- cucCAGcCGUCGUGGCUGU-UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 28869 0.69 0.553797
Target:  5'- -cGGUCGGCAuagugggaaCACCGA--ACGGCGCg -3'
miRNA:   3'- cuCCAGCCGUc--------GUGGCUguUGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.