miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 29755 0.66 0.735832
Target:  5'- cGGG-CGGCcauggccagcGCACCGACGGCGuucgGCAUg -3'
miRNA:   3'- cUCCaGCCGu---------CGUGGCUGUUGC----UGUG- -5'
19122 5' -56.2 NC_004684.1 + 30318 0.74 0.298033
Target:  5'- cGAGGUCGG-GGCACCGGCcACGuCGu -3'
miRNA:   3'- -CUCCAGCCgUCGUGGCUGuUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 30518 0.69 0.522295
Target:  5'- uGGGGUCGGUgaAGUucACCGcCGACGGCu- -3'
miRNA:   3'- -CUCCAGCCG--UCG--UGGCuGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 32053 0.67 0.672287
Target:  5'- cGA-GUCGGCGuugacGCACaCGGCGACG-CACc -3'
miRNA:   3'- -CUcCAGCCGU-----CGUG-GCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 32218 0.74 0.276716
Target:  5'- cGGGaGcCGGUucGGUAUCGACAGCGGCGCg -3'
miRNA:   3'- -CUC-CaGCCG--UCGUGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32274 0.68 0.584765
Target:  5'- -cGGUCGGCGaagagguGCAUUGGCGcuCGGCGCu -3'
miRNA:   3'- cuCCAGCCGU-------CGUGGCUGUu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 32658 0.73 0.336344
Target:  5'- -cGGUUGGCaaGGC-CUGGCGGCGGCAUg -3'
miRNA:   3'- cuCCAGCCG--UCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 33476 0.68 0.607401
Target:  5'- -cGG-CGGCGGCugCGguggacGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCGUCGugGC------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 33610 0.66 0.683031
Target:  5'- uGGGGccaGGCAGCGCCGGaucgucgGGCGGCuACc -3'
miRNA:   3'- -CUCCag-CCGUCGUGGCUg------UUGCUG-UG- -5'
19122 5' -56.2 NC_004684.1 + 33644 0.66 0.714938
Target:  5'- uGAGGUCGGgGGCGucCUGGCcGCGcUGCg -3'
miRNA:   3'- -CUCCAGCCgUCGU--GGCUGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 33755 0.68 0.564427
Target:  5'- aGGGGUCgcugacgaGGUAGCcgcCCGACGAucCGGCGCu -3'
miRNA:   3'- -CUCCAG--------CCGUCGu--GGCUGUU--GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 33790 0.69 0.508857
Target:  5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3'
miRNA:   3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 33830 0.72 0.378124
Target:  5'- -cGGUgugccCGGCGGCGgCGGCAACGGgGCc -3'
miRNA:   3'- cuCCA-----GCCGUCGUgGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 34479 0.67 0.650699
Target:  5'- cAGGUC--CGGCACCGcCGAgGACACc -3'
miRNA:   3'- cUCCAGccGUCGUGGCuGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 35081 0.66 0.683031
Target:  5'- --cGUUGGUGuGCACCGGCGucaGGCACa -3'
miRNA:   3'- cucCAGCCGU-CGUGGCUGUug-CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 35511 0.67 0.629045
Target:  5'- uGAGGagcacCGGCGcuacuGCACCGAguGCgGGCACg -3'
miRNA:   3'- -CUCCa----GCCGU-----CGUGGCUguUG-CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 35664 0.66 0.693728
Target:  5'- --cGUCGGCGGCggugugucgccACCGGCGAUGAa-- -3'
miRNA:   3'- cucCAGCCGUCG-----------UGGCUGUUGCUgug -5'
19122 5' -56.2 NC_004684.1 + 36104 0.78 0.155916
Target:  5'- cGAGGUaCGGCGGUAgCCGcCGACGAUGCg -3'
miRNA:   3'- -CUCCA-GCCGUCGU-GGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 36264 0.68 0.564427
Target:  5'- uGAGGUgucCGGCGGC-CUGGCcaagAACGAgGCg -3'
miRNA:   3'- -CUCCA---GCCGUCGuGGCUG----UUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 36791 0.72 0.344424
Target:  5'- -uGGUCGGCGGCGgcUCGGuCAgcuACGACACc -3'
miRNA:   3'- cuCCAGCCGUCGU--GGCU-GU---UGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.