miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 57541 0.69 0.501682
Target:  5'- -cGG-CGGCAGCucACCGGCGGCGGu-- -3'
miRNA:   3'- cuCCaGCCGUCG--UGGCUGUUGCUgug -5'
19122 5' -56.2 NC_004684.1 + 57391 0.75 0.231734
Target:  5'- cAGGUcCGGCAGUuCCGGCAACGGgAUg -3'
miRNA:   3'- cUCCA-GCCGUCGuGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 57251 0.66 0.704367
Target:  5'- uGGG-CgGGCGGCACCGuCGGCccGCACa -3'
miRNA:   3'- cUCCaG-CCGUCGUGGCuGUUGc-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 57060 0.67 0.629045
Target:  5'- cGGGGUCgauGGCGGcCugCGuu-GCGGCGCg -3'
miRNA:   3'- -CUCCAG---CCGUC-GugGCuguUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 55559 0.69 0.522295
Target:  5'- cGAaGUCGcGcCAGuCGCCgGACAGCGGCGCg -3'
miRNA:   3'- -CUcCAGC-C-GUC-GUGG-CUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 55284 0.72 0.369494
Target:  5'- cGGGGUCGGgGGUugCGugAugGcCGCc -3'
miRNA:   3'- -CUCCAGCCgUCGugGCugUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 55198 0.66 0.693728
Target:  5'- -uGG-CGGCGGCGCUGGaugccuACGAgGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGCUgu----UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 54456 0.72 0.360158
Target:  5'- gGGGGUgccgaCGGCGGCgaaguugGCCGACGGCG-CACc -3'
miRNA:   3'- -CUCCA-----GCCGUCG-------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 54296 0.68 0.596605
Target:  5'- uGGGG-CGGCGuGCACCGcGCGAaccggGGCGCa -3'
miRNA:   3'- -CUCCaGCCGU-CGUGGC-UGUUg----CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 54224 0.71 0.427
Target:  5'- cGAGGUCGGCcagcagcuguuccagGGCACCG-CGcCGGgACa -3'
miRNA:   3'- -CUCCAGCCG---------------UCGUGGCuGUuGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 54060 0.71 0.423252
Target:  5'- cAGGUCGGuCGGguCCGGC-ACGuCGCa -3'
miRNA:   3'- cUCCAGCC-GUCguGGCUGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 53775 0.66 0.693728
Target:  5'- -uGGUCGGguccCAG-ACCGGC-GCGGCGCu -3'
miRNA:   3'- cuCCAGCC----GUCgUGGCUGuUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 53659 0.73 0.305416
Target:  5'- cGAGGU-GGUGGCACCGAC--CGACAg -3'
miRNA:   3'- -CUCCAgCCGUCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 53539 0.69 0.526457
Target:  5'- cAGGUCGGC-GCggaugaccucggagaACC-ACGACGGCGCa -3'
miRNA:   3'- cUCCAGCCGuCG---------------UGGcUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 52902 0.67 0.618217
Target:  5'- gGAGcGUcCGGcCAGCA-CGGCGGCGugGCc -3'
miRNA:   3'- -CUC-CA-GCC-GUCGUgGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 50817 0.66 0.693728
Target:  5'- -uGG-CGGCGGUACCacgcguucACGAUGACGCc -3'
miRNA:   3'- cuCCaGCCGUCGUGGc-------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 50608 0.75 0.25021
Target:  5'- -cGGUCGGCGGguCAUCGGCGuggcCGACACa -3'
miRNA:   3'- cuCCAGCCGUC--GUGGCUGUu---GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 50270 0.66 0.683031
Target:  5'- uGGGGUCgucgcuGGcCAGCGCCaggcccGACGGCGACu- -3'
miRNA:   3'- -CUCCAG------CC-GUCGUGG------CUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 49707 0.67 0.617135
Target:  5'- cGGGcacgcgcUCGGCGGCGCgGcguucaaacuCAGCGGCACg -3'
miRNA:   3'- cUCC-------AGCCGUCGUGgCu---------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49651 0.67 0.618217
Target:  5'- -cGGUUGGCcGCGCCGGauuccgGGCGAcCGCa -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUg-----UUGCU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.