miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 49236 0.71 0.395785
Target:  5'- cGGGcGUCGGCAcGuCGCCccACAGCGGCGCg -3'
miRNA:   3'- -CUC-CAGCCGU-C-GUGGc-UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 49180 0.72 0.344424
Target:  5'- ---cUCGGCGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cuccAGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 49055 0.7 0.442186
Target:  5'- -cGGUCGGCuccgggggcGGCACCGGCGuGCGGaACa -3'
miRNA:   3'- cuCCAGCCG---------UCGUGGCUGU-UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 48908 0.67 0.661506
Target:  5'- -cGGU-GGCGGUGCCGgACAcCGACAg -3'
miRNA:   3'- cuCCAgCCGUCGUGGC-UGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 46740 0.69 0.543227
Target:  5'- uGAGG-CGGCGGUauuguccagcguGCgGACGcagGCGGCGCa -3'
miRNA:   3'- -CUCCaGCCGUCG------------UGgCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 46329 0.7 0.491509
Target:  5'- cAGGUgccCGGuCAGCACCGGCAccCGuGCACg -3'
miRNA:   3'- cUCCA---GCC-GUCGUGGCUGUu-GC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 45380 0.75 0.23594
Target:  5'- cAGGUCGGCgAGCACCGGCcccauggccuccugGACcGCGCg -3'
miRNA:   3'- cUCCAGCCG-UCGUGGCUG--------------UUGcUGUG- -5'
19122 5' -56.2 NC_004684.1 + 44948 0.67 0.618217
Target:  5'- cGGGaUCGccGCcGCGCCGACGGCGAUg- -3'
miRNA:   3'- cUCC-AGC--CGuCGUGGCUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 44913 0.66 0.714938
Target:  5'- uGGcGUCGGUGcGCGCCGGguagucggUGGCGACGCu -3'
miRNA:   3'- cUC-CAGCCGU-CGUGGCU--------GUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 43444 0.69 0.501682
Target:  5'- cGAGGUCGGUgcggcgGGCGCgGcagcagguGCGGCGGCAg -3'
miRNA:   3'- -CUCCAGCCG------UCGUGgC--------UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 43191 0.68 0.575111
Target:  5'- cGAuGUCGGgcaccgcaGGCACCGGCAuuuugggcgGCGGCACc -3'
miRNA:   3'- -CUcCAGCCg-------UCGUGGCUGU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 42712 0.67 0.658266
Target:  5'- -uGGUCGGCAGgccuggaaccucacCGCCGuCGGCGAaguGCa -3'
miRNA:   3'- cuCCAGCCGUC--------------GUGGCuGUUGCUg--UG- -5'
19122 5' -56.2 NC_004684.1 + 42538 0.66 0.683031
Target:  5'- -uGGUCGGC-GUGCUGACGGCGuuCGg -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUGUUGCu-GUg -5'
19122 5' -56.2 NC_004684.1 + 41278 0.71 0.403904
Target:  5'- -cGGUCGGaCAGCGCCGAgGuguuggagaucagGCGAcCGCu -3'
miRNA:   3'- cuCCAGCC-GUCGUGGCUgU-------------UGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 40474 0.67 0.618217
Target:  5'- gGGGGucUCGGCGgucuGCGCCGAguGCGccaGCACc -3'
miRNA:   3'- -CUCC--AGCCGU----CGUGGCUguUGC---UGUG- -5'
19122 5' -56.2 NC_004684.1 + 40128 0.68 0.596605
Target:  5'- -uGG-CGGCcucGGCACCGACcuCGGCGa -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 39407 0.68 0.607401
Target:  5'- cGGGuGUCGGCAGUuugauACgCGACAAgGAC-Cg -3'
miRNA:   3'- -CUC-CAGCCGUCG-----UG-GCUGUUgCUGuG- -5'
19122 5' -56.2 NC_004684.1 + 39132 0.69 0.522295
Target:  5'- cGGGGUCGGCAaccuGCACaaccucuaCGuCAACGGCGa -3'
miRNA:   3'- -CUCCAGCCGU----CGUG--------GCuGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 36985 0.67 0.660427
Target:  5'- cAGGUguugccaCGGCAGCGCCGGgAugcGCGugGg -3'
miRNA:   3'- cUCCA-------GCCGUCGUGGCUgU---UGCugUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.