Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 5' | -56.2 | NC_004684.1 | + | 28869 | 0.69 | 0.553797 |
Target: 5'- -cGGUCGGCAuagugggaaCACCGA--ACGGCGCg -3' miRNA: 3'- cuCCAGCCGUc--------GUGGCUguUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 28732 | 0.67 | 0.672287 |
Target: 5'- --cGUCuGCGGCACCGACGuGCGGUGCg -3' miRNA: 3'- cucCAGcCGUCGUGGCUGU-UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 27318 | 0.67 | 0.650699 |
Target: 5'- -cGGUgCGGcCAGCuuUGACGACGGCGg -3' miRNA: 3'- cuCCA-GCC-GUCGugGCUGUUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 27264 | 0.7 | 0.471459 |
Target: 5'- cGAGGUCGGUgccgaggccgccAGCGCCcGCuACGGcCACg -3' miRNA: 3'- -CUCCAGCCG------------UCGUGGcUGuUGCU-GUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 27075 | 0.66 | 0.711775 |
Target: 5'- cGAGGUCGuGCcugccgGGCgcuacgccaucgacACCaACGACGGCGCg -3' miRNA: 3'- -CUCCAGC-CG------UCG--------------UGGcUGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 26863 | 0.67 | 0.650699 |
Target: 5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3' miRNA: 3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 26611 | 0.7 | 0.451831 |
Target: 5'- -cGG-CGGCGGCgucAUCGcCAACGACACc -3' miRNA: 3'- cuCCaGCCGUCG---UGGCuGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 26430 | 0.69 | 0.552737 |
Target: 5'- cGGGGUucgccgcCGGUGGC-CCGguguACGGCGGCACg -3' miRNA: 3'- -CUCCA-------GCCGUCGuGGC----UGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 26364 | 0.69 | 0.532724 |
Target: 5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3' miRNA: 3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25939 | 0.69 | 0.532724 |
Target: 5'- cGGGGUCaGCc-CACUGACAccgGCGGCACc -3' miRNA: 3'- -CUCCAGcCGucGUGGCUGU---UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25658 | 0.69 | 0.511945 |
Target: 5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3' miRNA: 3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25192 | 0.67 | 0.633377 |
Target: 5'- -uGGUUGGCcaGGCGCUGGCAccggguggcuucacCGGCACg -3' miRNA: 3'- cuCCAGCCG--UCGUGGCUGUu-------------GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25065 | 0.7 | 0.481433 |
Target: 5'- aAGuUCGcGC-GCACCGGCAACGugGCc -3' miRNA: 3'- cUCcAGC-CGuCGUGGCUGUUGCugUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25034 | 0.68 | 0.575111 |
Target: 5'- -uGGa-GGCGGCAUCGACGugG-CGCa -3' miRNA: 3'- cuCCagCCGUCGUGGCUGUugCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 25003 | 0.67 | 0.650699 |
Target: 5'- uGGGGUCGGCGGgGCCGAUugucucUGcCAUc -3' miRNA: 3'- -CUCCAGCCGUCgUGGCUGuu----GCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 24809 | 0.67 | 0.661506 |
Target: 5'- -cGGUCGGCAaCAUCGcGCAG-GACACc -3' miRNA: 3'- cuCCAGCCGUcGUGGC-UGUUgCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 24759 | 0.75 | 0.225835 |
Target: 5'- -uGG-CGGCaccAGCACCGGCGGCGGCGg -3' miRNA: 3'- cuCCaGCCG---UCGUGGCUGUUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 24106 | 0.67 | 0.639875 |
Target: 5'- aAGGUgCcGCAGC-CCGGCAcgcCGACGCa -3' miRNA: 3'- cUCCA-GcCGUCGuGGCUGUu--GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 23715 | 0.67 | 0.629045 |
Target: 5'- uGGG-CGGCGGCgcgcucaacaucGCUGGCGGCG-CACu -3' miRNA: 3'- cUCCaGCCGUCG------------UGGCUGUUGCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 22348 | 0.72 | 0.361 |
Target: 5'- cAGG-CGGUGGCGgCGGCGGCGGCGg -3' miRNA: 3'- cUCCaGCCGUCGUgGCUGUUGCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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