miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 32274 0.68 0.584765
Target:  5'- -cGGUCGGCGaagagguGCAUUGGCGcuCGGCGCu -3'
miRNA:   3'- cuCCAGCCGU-------CGUGGCUGUu-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 26364 0.69 0.532724
Target:  5'- --cGUCGGgcaaCGGCACCGGCAACGuCGg -3'
miRNA:   3'- cucCAGCC----GUCGUGGCUGUUGCuGUg -5'
19122 5' -56.2 NC_004684.1 + 12791 0.69 0.532724
Target:  5'- cGAGGacaaCGGCAccccCGCCGACGACG-CGCc -3'
miRNA:   3'- -CUCCa---GCCGUc---GUGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 33790 0.69 0.508857
Target:  5'- -cGGUCGGCGGCAagucaucgagcgguUCGGCGuCGGCGg -3'
miRNA:   3'- cuCCAGCCGUCGU--------------GGCUGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8911 0.69 0.511945
Target:  5'- -uGGUCGGCcuGGCAgaUCGGCGACGAgGa -3'
miRNA:   3'- cuCCAGCCG--UCGU--GGCUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 6410 0.69 0.511945
Target:  5'- cGAGGuguacagcUCGGCGGCGgCGugAACGccuuCGCg -3'
miRNA:   3'- -CUCC--------AGCCGUCGUgGCugUUGCu---GUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 30518 0.69 0.522295
Target:  5'- uGGGGUCGGUgaAGUucACCGcCGACGGCu- -3'
miRNA:   3'- -CUCCAGCCG--UCG--UGGCuGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 57764 0.69 0.522295
Target:  5'- -cGGUCaGGCGGUcuaCGACAcCGACACc -3'
miRNA:   3'- cuCCAG-CCGUCGug-GCUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 39132 0.69 0.522295
Target:  5'- cGGGGUCGGCAaccuGCACaaccucuaCGuCAACGGCGa -3'
miRNA:   3'- -CUCCAGCCGU----CGUG--------GCuGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 18314 0.74 0.276716
Target:  5'- -cGGUUGGCGGCGaCGugGGCGACGa -3'
miRNA:   3'- cuCCAGCCGUCGUgGCugUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 5932 0.74 0.276716
Target:  5'- uAGGU-GGCacgcgAGCACCGGCGGCGAgACa -3'
miRNA:   3'- cUCCAgCCG-----UCGUGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 45380 0.75 0.23594
Target:  5'- cAGGUCGGCgAGCACCGGCcccauggccuccugGACcGCGCg -3'
miRNA:   3'- cUCCAGCCG-UCGUGGCUG--------------UUGcUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57391 0.75 0.231734
Target:  5'- cAGGUcCGGCAGUuCCGGCAACGGgAUg -3'
miRNA:   3'- cUCCA-GCCGUCGuGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 24759 0.75 0.225835
Target:  5'- -uGG-CGGCaccAGCACCGGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 6076 0.77 0.193073
Target:  5'- cGAGGgCGGCGGC-CCGGCGGCGGUGCu -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 63564 0.66 0.735832
Target:  5'- -cGGUCGGCA-CGCCGA--ACG-CGCc -3'
miRNA:   3'- cuCCAGCCGUcGUGGCUguUGCuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.