miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 54456 0.72 0.360158
Target:  5'- gGGGGUgccgaCGGCGGCgaaguugGCCGACGGCG-CACc -3'
miRNA:   3'- -CUCCA-----GCCGUCG-------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 18117 0.71 0.395785
Target:  5'- cGAGGcCGGUguGGaCACCGccaACAugGACGCg -3'
miRNA:   3'- -CUCCaGCCG--UC-GUGGC---UGUugCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 54060 0.71 0.423252
Target:  5'- cAGGUCGGuCGGguCCGGC-ACGuCGCa -3'
miRNA:   3'- cUCCAGCC-GUCguGGCUGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 7662 0.7 0.491509
Target:  5'- cGGGUCGGCGGCcuaCGuCGugGAuCGCa -3'
miRNA:   3'- cUCCAGCCGUCGug-GCuGUugCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 8956 0.66 0.693728
Target:  5'- cGGGUcCGGCacGGgGCCGgagGCAACGGCGg -3'
miRNA:   3'- cUCCA-GCCG--UCgUGGC---UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 48908 0.67 0.661506
Target:  5'- -cGGU-GGCGGUGCCGgACAcCGACAg -3'
miRNA:   3'- cuCCAgCCGUCGUGGC-UGUuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 26863 0.67 0.650699
Target:  5'- gGAGGUCGcCAcCGCCGACAaccuggGCGuGCGCg -3'
miRNA:   3'- -CUCCAGCcGUcGUGGCUGU------UGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 33830 0.72 0.378124
Target:  5'- -cGGUgugccCGGCGGCGgCGGCAACGGgGCc -3'
miRNA:   3'- cuCCA-----GCCGUCGUgGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 10302 0.67 0.618217
Target:  5'- aGAGGUCGcCcGCACCGAUGugcGCGcCGCa -3'
miRNA:   3'- -CUCCAGCcGuCGUGGCUGU---UGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 40474 0.67 0.618217
Target:  5'- gGGGGucUCGGCGgucuGCGCCGAguGCGccaGCACc -3'
miRNA:   3'- -CUCC--AGCCGU----CGUGGCUguUGC---UGUG- -5'
19122 5' -56.2 NC_004684.1 + 52902 0.67 0.618217
Target:  5'- gGAGcGUcCGGcCAGCA-CGGCGGCGugGCc -3'
miRNA:   3'- -CUC-CA-GCC-GUCGUgGCUGUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 11950 0.67 0.629045
Target:  5'- -uGGUCGcCAGC-CUGGCAccuGCGGCGCc -3'
miRNA:   3'- cuCCAGCcGUCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 47445 0.69 0.516075
Target:  5'- -uGGUCGcGCAGCucGCUGagguagucgcuaccaGCGGCGGCACg -3'
miRNA:   3'- cuCCAGC-CGUCG--UGGC---------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 25658 0.69 0.511945
Target:  5'- -cGG-CGGCGGUACCGgGCAG-GGCGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGC-UGUUgCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 11985 0.69 0.511945
Target:  5'- ----cCGGCGGCACCGACGGCauGACcccGCa -3'
miRNA:   3'- cuccaGCCGUCGUGGCUGUUG--CUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 25192 0.67 0.633377
Target:  5'- -uGGUUGGCcaGGCGCUGGCAccggguggcuucacCGGCACg -3'
miRNA:   3'- cuCCAGCCG--UCGUGGCUGUu-------------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 3567 0.67 0.639875
Target:  5'- aAGGUCGuGguGCGCC-ACAGCGGgGa -3'
miRNA:   3'- cUCCAGC-CguCGUGGcUGUUGCUgUg -5'
19122 5' -56.2 NC_004684.1 + 23715 0.67 0.629045
Target:  5'- uGGG-CGGCGGCgcgcucaacaucGCUGGCGGCG-CACu -3'
miRNA:   3'- cUCCaGCCGUCG------------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 22348 0.72 0.361
Target:  5'- cAGG-CGGUGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cUCCaGCCGUCGUgGCUGUUGCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.