miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 4469 0.66 0.696926
Target:  5'- -uGGUCGGCuucgucaccggccagGGCcuggcccGCCGugGCAACGGCAUg -3'
miRNA:   3'- cuCCAGCCG---------------UCG-------UGGC--UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 53775 0.66 0.693728
Target:  5'- -uGGUCGGguccCAG-ACCGGC-GCGGCGCu -3'
miRNA:   3'- cuCCAGCC----GUCgUGGCUGuUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 55198 0.66 0.693728
Target:  5'- -uGG-CGGCGGCGCUGGaugccuACGAgGCg -3'
miRNA:   3'- cuCCaGCCGUCGUGGCUgu----UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 50817 0.66 0.693728
Target:  5'- -uGG-CGGCGGUACCacgcguucACGAUGACGCc -3'
miRNA:   3'- cuCCaGCCGUCGUGGc-------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 35664 0.66 0.693728
Target:  5'- --cGUCGGCGGCggugugucgccACCGGCGAUGAa-- -3'
miRNA:   3'- cucCAGCCGUCG-----------UGGCUGUUGCUgug -5'
19122 5' -56.2 NC_004684.1 + 57588 0.66 0.693728
Target:  5'- uGAGcGUCGGguGcCACCGGCGcagggccuCGGCGu -3'
miRNA:   3'- -CUC-CAGCCguC-GUGGCUGUu-------GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 8956 0.66 0.693728
Target:  5'- cGGGUcCGGCacGGgGCCGgagGCAACGGCGg -3'
miRNA:   3'- cUCCA-GCCG--UCgUGGC---UGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 65819 0.66 0.683031
Target:  5'- cAGGUgaccCGGaGGCACCGGCGGCu-CACa -3'
miRNA:   3'- cUCCA----GCCgUCGUGGCUGUUGcuGUG- -5'
19122 5' -56.2 NC_004684.1 + 33610 0.66 0.683031
Target:  5'- uGGGGccaGGCAGCGCCGGaucgucgGGCGGCuACc -3'
miRNA:   3'- -CUCCag-CCGUCGUGGCUg------UUGCUG-UG- -5'
19122 5' -56.2 NC_004684.1 + 6710 0.66 0.683031
Target:  5'- --cGUCGGCgcgAGCaaGCCGAagaaaGGCGACACc -3'
miRNA:   3'- cucCAGCCG---UCG--UGGCUg----UUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18418 0.66 0.683031
Target:  5'- -cGGccCGGCGggcGCACCGGCGGcCGACGu -3'
miRNA:   3'- cuCCa-GCCGU---CGUGGCUGUU-GCUGUg -5'
19122 5' -56.2 NC_004684.1 + 42538 0.66 0.683031
Target:  5'- -uGGUCGGC-GUGCUGACGGCGuuCGg -3'
miRNA:   3'- cuCCAGCCGuCGUGGCUGUUGCu-GUg -5'
19122 5' -56.2 NC_004684.1 + 15685 0.66 0.683031
Target:  5'- -uGGaaGGCGGCACCGGUAAaggucCGGCGCu -3'
miRNA:   3'- cuCCagCCGUCGUGGCUGUU-----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 50270 0.66 0.683031
Target:  5'- uGGGGUCgucgcuGGcCAGCGCCaggcccGACGGCGACu- -3'
miRNA:   3'- -CUCCAG------CC-GUCGUGG------CUGUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 35081 0.66 0.683031
Target:  5'- --cGUUGGUGuGCACCGGCGucaGGCACa -3'
miRNA:   3'- cucCAGCCGU-CGUGGCUGUug-CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 6849 0.67 0.672287
Target:  5'- aGGGuGUCGaCGGCACCGGgcGCGGCGa -3'
miRNA:   3'- -CUC-CAGCcGUCGUGGCUguUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 32053 0.67 0.672287
Target:  5'- cGA-GUCGGCGuugacGCACaCGGCGACG-CACc -3'
miRNA:   3'- -CUcCAGCCGU-----CGUG-GCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 28732 0.67 0.672287
Target:  5'- --cGUCuGCGGCACCGACGuGCGGUGCg -3'
miRNA:   3'- cucCAGcCGUCGUGGCUGU-UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 14320 0.67 0.672287
Target:  5'- aAGGUCGGUGGCaagaccaccGCUGACAucGCGuACAa -3'
miRNA:   3'- cUCCAGCCGUCG---------UGGCUGU--UGC-UGUg -5'
19122 5' -56.2 NC_004684.1 + 18396 0.67 0.672287
Target:  5'- cGGGGUCGGgccCGGCcaGCagGGCAcCGACGCg -3'
miRNA:   3'- -CUCCAGCC---GUCG--UGg-CUGUuGCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.