miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19123 3' -55.1 NC_004684.1 + 4021 0.66 0.811382
Target:  5'- uCGGCUGGCGCGucggccgcucGGUGcGcUgGGCGGUCa -3'
miRNA:   3'- -GUUGACCGUGCu---------CUAC-C-AgCUGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 48405 0.66 0.811382
Target:  5'- gAGCUGGC-CGAGAUugccgccuacaaGGacaUCGACaccgcgcuGGCCa -3'
miRNA:   3'- gUUGACCGuGCUCUA------------CC---AGCUG--------CCGG- -5'
19123 3' -55.1 NC_004684.1 + 41527 0.66 0.811382
Target:  5'- cCGGcCUGGC-CGAGGccGUUGAacaGGCCg -3'
miRNA:   3'- -GUU-GACCGuGCUCUacCAGCUg--CCGG- -5'
19123 3' -55.1 NC_004684.1 + 17187 0.66 0.811382
Target:  5'- gCAcCUGGCACGAcgccGAcGGcaacgUCGuGCGGCCc -3'
miRNA:   3'- -GUuGACCGUGCU----CUaCC-----AGC-UGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 24896 0.66 0.811382
Target:  5'- ---gUGGCuACGAGAUGGcCG-CcGCCg -3'
miRNA:   3'- guugACCG-UGCUCUACCaGCuGcCGG- -5'
19123 3' -55.1 NC_004684.1 + 18945 0.66 0.802056
Target:  5'- gAACUcGGCcacCGAGGUGGcaaGGCGGUg -3'
miRNA:   3'- gUUGA-CCGu--GCUCUACCag-CUGCCGg -5'
19123 3' -55.1 NC_004684.1 + 55984 0.66 0.802056
Target:  5'- gGGC-GGC-CGgguAGGUGGUCGGCgugaacgaGGCCa -3'
miRNA:   3'- gUUGaCCGuGC---UCUACCAGCUG--------CCGG- -5'
19123 3' -55.1 NC_004684.1 + 25381 0.66 0.802056
Target:  5'- ----cGGUACGGGAUccaggaGGUUGucgccaGCGGCCa -3'
miRNA:   3'- guugaCCGUGCUCUA------CCAGC------UGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 15751 0.66 0.802056
Target:  5'- gCGACUGGcCGCGuacaccgaaAGGUGcGcCGagcGCGGCCa -3'
miRNA:   3'- -GUUGACC-GUGC---------UCUAC-CaGC---UGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 30190 0.66 0.799224
Target:  5'- gAGCUGGUggccaccaaacccgGCGAGuccAUGGUgaucggggaGGCGGCCc -3'
miRNA:   3'- gUUGACCG--------------UGCUC---UACCAg--------CUGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 2181 0.66 0.792559
Target:  5'- ---aUGGCccGCGAGGUGc-CGcACGGCCa -3'
miRNA:   3'- guugACCG--UGCUCUACcaGC-UGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 22790 0.66 0.792559
Target:  5'- gGGCgUGGCugGcGAcuucaacacgcUGGUCGAcCGGCa -3'
miRNA:   3'- gUUG-ACCGugCuCU-----------ACCAGCU-GCCGg -5'
19123 3' -55.1 NC_004684.1 + 4117 0.66 0.7916
Target:  5'- cCAACUGGCcaagccuguACcuGAUGGUCGugGacaagcugcucggGCCg -3'
miRNA:   3'- -GUUGACCG---------UGcuCUACCAGCugC-------------CGG- -5'
19123 3' -55.1 NC_004684.1 + 24609 0.66 0.782901
Target:  5'- gGACgUGGCGCGc-AUGGgCGGCcaGGCCa -3'
miRNA:   3'- gUUG-ACCGUGCucUACCaGCUG--CCGG- -5'
19123 3' -55.1 NC_004684.1 + 16794 0.66 0.782901
Target:  5'- ----cGGCGCGucguGUGGUgGGCGcGCCa -3'
miRNA:   3'- guugaCCGUGCuc--UACCAgCUGC-CGG- -5'
19123 3' -55.1 NC_004684.1 + 11839 0.66 0.778995
Target:  5'- gCGACUGGCGCGAcuucggcaacgGGUacgaacucgUGGCGGCg -3'
miRNA:   3'- -GUUGACCGUGCUcua--------CCA---------GCUGCCGg -5'
19123 3' -55.1 NC_004684.1 + 42830 0.66 0.773092
Target:  5'- ----cGGCAUGAGcAUGGcCGggacgcuaucGCGGCCc -3'
miRNA:   3'- guugaCCGUGCUC-UACCaGC----------UGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 65322 0.66 0.773092
Target:  5'- gAGCUGGCGCGcuccaccacGUGG-CGcUGGCCg -3'
miRNA:   3'- gUUGACCGUGCuc-------UACCaGCuGCCGG- -5'
19123 3' -55.1 NC_004684.1 + 6404 0.66 0.773092
Target:  5'- --gUUGGC-CGAGGUGuacagcUCGGCGGCg -3'
miRNA:   3'- guuGACCGuGCUCUACc-----AGCUGCCGg -5'
19123 3' -55.1 NC_004684.1 + 64402 0.66 0.773092
Target:  5'- ----cGGCGCGGuGAUGGccUCGAacccguUGGCCa -3'
miRNA:   3'- guugaCCGUGCU-CUACC--AGCU------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.