miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19123 5' -57.1 NC_004684.1 + 1150 1.11 0.000731
Target:  5'- gCCGGGCGUGCCGACCGUGCACUUUGGu -3'
miRNA:   3'- -GGCCCGCACGGCUGGCACGUGAAACC- -5'
19123 5' -57.1 NC_004684.1 + 54453 0.77 0.18794
Target:  5'- aCCGGGgGUGCCGACgGcgGCGaagUUGGc -3'
miRNA:   3'- -GGCCCgCACGGCUGgCa-CGUga-AACC- -5'
19123 5' -57.1 NC_004684.1 + 19008 0.76 0.202992
Target:  5'- gCCGGG-GUGCUGAUCGUGCACc---- -3'
miRNA:   3'- -GGCCCgCACGGCUGGCACGUGaaacc -5'
19123 5' -57.1 NC_004684.1 + 49131 0.74 0.287542
Target:  5'- gCCGGGCGUGCCGuuGCCGU-CGa--UGGc -3'
miRNA:   3'- -GGCCCGCACGGC--UGGCAcGUgaaACC- -5'
19123 5' -57.1 NC_004684.1 + 6789 0.74 0.287542
Target:  5'- gCCGGGUGaccgGCCugcgcACCGUGCGCggcgUGGa -3'
miRNA:   3'- -GGCCCGCa---CGGc----UGGCACGUGaa--ACC- -5'
19123 5' -57.1 NC_004684.1 + 21058 0.73 0.316316
Target:  5'- aCGGGUgccgGUGCUGACCGgGCACc-UGGg -3'
miRNA:   3'- gGCCCG----CACGGCUGGCaCGUGaaACC- -5'
19123 5' -57.1 NC_004684.1 + 65758 0.73 0.323841
Target:  5'- gCGGGCGUugGCCG-CCGcGCGCcggUGGg -3'
miRNA:   3'- gGCCCGCA--CGGCuGGCaCGUGaa-ACC- -5'
19123 5' -57.1 NC_004684.1 + 33228 0.73 0.323841
Target:  5'- cUCGGGCGUGCCGgugagcagcACCGUGC-Cg---- -3'
miRNA:   3'- -GGCCCGCACGGC---------UGGCACGuGaaacc -5'
19123 5' -57.1 NC_004684.1 + 10630 0.72 0.355262
Target:  5'- aUGGGCGUGCUGGCCGaGgACga-GGa -3'
miRNA:   3'- gGCCCGCACGGCUGGCaCgUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 17078 0.71 0.442752
Target:  5'- gCCGGGCGcaCCGACUGgGCACgcgUGa -3'
miRNA:   3'- -GGCCCGCacGGCUGGCaCGUGaa-ACc -5'
19123 5' -57.1 NC_004684.1 + 2291 0.7 0.480998
Target:  5'- cCUGGGCcacgacgcgGUGCUGaccGCCGUGCACgucGGu -3'
miRNA:   3'- -GGCCCG---------CACGGC---UGGCACGUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 1059 0.7 0.500715
Target:  5'- aCCGGuuGUGCUGGCUGgcgGCGCU--GGa -3'
miRNA:   3'- -GGCCcgCACGGCUGGCa--CGUGAaaCC- -5'
19123 5' -57.1 NC_004684.1 + 58758 0.7 0.500715
Target:  5'- gCGGGgGUGCCGaggaucggcgguGCCGgUGCACcg-GGc -3'
miRNA:   3'- gGCCCgCACGGC------------UGGC-ACGUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 9773 0.7 0.500715
Target:  5'- aCCGGGUGgcugGCCGuaccGCuCGUGCACg---- -3'
miRNA:   3'- -GGCCCGCa---CGGC----UG-GCACGUGaaacc -5'
19123 5' -57.1 NC_004684.1 + 50657 0.69 0.510706
Target:  5'- gUCGGGgGUGCgGACCaggcGUGCGCcc-GGu -3'
miRNA:   3'- -GGCCCgCACGgCUGG----CACGUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 6236 0.69 0.510706
Target:  5'- gCCGGGUG-GCUGACCGaGUACa---- -3'
miRNA:   3'- -GGCCCGCaCGGCUGGCaCGUGaaacc -5'
19123 5' -57.1 NC_004684.1 + 40941 0.69 0.52078
Target:  5'- gCCaGGCGUGCCG-CCGUaCACcg-GGc -3'
miRNA:   3'- -GGcCCGCACGGCuGGCAcGUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 5809 0.69 0.52078
Target:  5'- gUCGGGaCGUGCCGcACCGUggaGUACaagcUGGc -3'
miRNA:   3'- -GGCCC-GCACGGC-UGGCA---CGUGaa--ACC- -5'
19123 5' -57.1 NC_004684.1 + 51640 0.69 0.541152
Target:  5'- gCCGcuGCGcagcUGCUGGCCGUGCACga-GGc -3'
miRNA:   3'- -GGCc-CGC----ACGGCUGGCACGUGaaaCC- -5'
19123 5' -57.1 NC_004684.1 + 26324 0.68 0.57218
Target:  5'- gCCGGGCcgccgauUGCCGACgCGgUGCGCUc-GGc -3'
miRNA:   3'- -GGCCCGc------ACGGCUG-GC-ACGUGAaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.