miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19124 3' -55.9 NC_004684.1 + 4029 0.66 0.764833
Target:  5'- cGCGuCGGCCGCUcgguGCGCUGGGcGGuCAcCGg -3'
miRNA:   3'- -CGU-GCCGGUGA----UGCGGCUC-CU-GUuGU- -5'
19124 3' -55.9 NC_004684.1 + 62947 0.66 0.764833
Target:  5'- cGUGCGGCCuccaGCUGCGCCaGcAGGcCcGCGc -3'
miRNA:   3'- -CGUGCCGG----UGAUGCGG-C-UCCuGuUGU- -5'
19124 3' -55.9 NC_004684.1 + 7907 0.66 0.764833
Target:  5'- cGUugGGgCCGCUG-GCCGcgcagguGGugGACAu -3'
miRNA:   3'- -CGugCC-GGUGAUgCGGCu------CCugUUGU- -5'
19124 3' -55.9 NC_004684.1 + 20145 0.66 0.764833
Target:  5'- cGCGCaGCCGCUacccucGCGCcCGAGG-CGguGCGc -3'
miRNA:   3'- -CGUGcCGGUGA------UGCG-GCUCCuGU--UGU- -5'
19124 3' -55.9 NC_004684.1 + 20252 0.66 0.764833
Target:  5'- gGCACcggGGCCGcCUACGCCaccGAGGcGCAc-- -3'
miRNA:   3'- -CGUG---CCGGU-GAUGCGG---CUCC-UGUugu -5'
19124 3' -55.9 NC_004684.1 + 45651 0.66 0.764833
Target:  5'- cGCGCGGCCGaccauCUGCGCguaGAGGuuuuuUGACc -3'
miRNA:   3'- -CGUGCCGGU-----GAUGCGg--CUCCu----GUUGu -5'
19124 3' -55.9 NC_004684.1 + 54607 0.66 0.764833
Target:  5'- cGCGCGuGCgCGCguacgugugcGCGCgCGAGGACGGg- -3'
miRNA:   3'- -CGUGC-CG-GUGa---------UGCG-GCUCCUGUUgu -5'
19124 3' -55.9 NC_004684.1 + 4740 0.66 0.764833
Target:  5'- cGCACGGCCACa--GCCGcaAGuGCcGCGa -3'
miRNA:   3'- -CGUGCCGGUGaugCGGC--UCcUGuUGU- -5'
19124 3' -55.9 NC_004684.1 + 54946 0.66 0.764833
Target:  5'- -aGCGGCUcaaguccuGCUuCGCgCGGGGugAACGg -3'
miRNA:   3'- cgUGCCGG--------UGAuGCG-GCUCCugUUGU- -5'
19124 3' -55.9 NC_004684.1 + 36775 0.66 0.764833
Target:  5'- uCGCGGUCACUcccucgaagaACGCCcacacgcGGGCGGCGa -3'
miRNA:   3'- cGUGCCGGUGA----------UGCGGcu-----CCUGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 41883 0.66 0.761831
Target:  5'- cGCA-GGCCcgcgacaugaacgcGCUG-GCCGAccGGACGACAu -3'
miRNA:   3'- -CGUgCCGG--------------UGAUgCGGCU--CCUGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 2696 0.66 0.754783
Target:  5'- cGCAucccCGGCCugGCcgGUGCCGGGGGCAAg- -3'
miRNA:   3'- -CGU----GCCGG--UGa-UGCGGCUCCUGUUgu -5'
19124 3' -55.9 NC_004684.1 + 4933 0.66 0.754783
Target:  5'- -aACGGCCACcucccggaGCGCUGgcAGGACuACGa -3'
miRNA:   3'- cgUGCCGGUGa-------UGCGGC--UCCUGuUGU- -5'
19124 3' -55.9 NC_004684.1 + 42519 0.66 0.754783
Target:  5'- -aACGGCgCGCUcacCGCCGuGGuCGGCGu -3'
miRNA:   3'- cgUGCCG-GUGAu--GCGGCuCCuGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 18782 0.66 0.754783
Target:  5'- cGCACGGCa------CCGAGGugGGCAa -3'
miRNA:   3'- -CGUGCCGgugaugcGGCUCCugUUGU- -5'
19124 3' -55.9 NC_004684.1 + 32729 0.66 0.754783
Target:  5'- cGCACGGCCuACaucgaccggUACGUCGcGGcCGACc -3'
miRNA:   3'- -CGUGCCGG-UG---------AUGCGGCuCCuGUUGu -5'
19124 3' -55.9 NC_004684.1 + 38017 0.66 0.744612
Target:  5'- uCugGuGCCACaACGCCucagcGGGGACgGACAg -3'
miRNA:   3'- cGugC-CGGUGaUGCGG-----CUCCUG-UUGU- -5'
19124 3' -55.9 NC_004684.1 + 977 0.66 0.744612
Target:  5'- uGUACGGCgggacggaccCGCcGC-CCGAGGAgGACAc -3'
miRNA:   3'- -CGUGCCG----------GUGaUGcGGCUCCUgUUGU- -5'
19124 3' -55.9 NC_004684.1 + 59684 0.66 0.744612
Target:  5'- uCACGGCCA--GCGCCac-GGCGACGg -3'
miRNA:   3'- cGUGCCGGUgaUGCGGcucCUGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 63484 0.66 0.744612
Target:  5'- gGCGCgaGGCCuccaGCUGCGCCugcgccagcAGGGCGGCc -3'
miRNA:   3'- -CGUG--CCGG----UGAUGCGGc--------UCCUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.