miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19124 3' -55.9 NC_004684.1 + 43262 0.66 0.744612
Target:  5'- aGCACGGCCAUguCGCCGcGcACcACGu -3'
miRNA:   3'- -CGUGCCGGUGauGCGGCuCcUGuUGU- -5'
19124 3' -55.9 NC_004684.1 + 51651 0.66 0.744612
Target:  5'- aCGCGGCCAgU-CGCU--GGGCAACu -3'
miRNA:   3'- cGUGCCGGUgAuGCGGcuCCUGUUGu -5'
19124 3' -55.9 NC_004684.1 + 3133 0.66 0.744612
Target:  5'- -aGgGGCCG-UACGCCGGGGuCAcgguGCAg -3'
miRNA:   3'- cgUgCCGGUgAUGCGGCUCCuGU----UGU- -5'
19124 3' -55.9 NC_004684.1 + 46719 0.66 0.744612
Target:  5'- aGCGC-GCCACcgacauUACGuuGAGG-CGGCGg -3'
miRNA:   3'- -CGUGcCGGUG------AUGCggCUCCuGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 7663 0.66 0.744612
Target:  5'- gGguCGGCgGcCUACGUCGuGGAUcGCAg -3'
miRNA:   3'- -CguGCCGgU-GAUGCGGCuCCUGuUGU- -5'
19124 3' -55.9 NC_004684.1 + 38017 0.66 0.744612
Target:  5'- uCugGuGCCACaACGCCucagcGGGGACgGACAg -3'
miRNA:   3'- cGugC-CGGUGaUGCGG-----CUCCUG-UUGU- -5'
19124 3' -55.9 NC_004684.1 + 22176 0.66 0.734332
Target:  5'- cGCAgGGCCACggcgGCGgCGAccgccuucGGACuggcGCAg -3'
miRNA:   3'- -CGUgCCGGUGa---UGCgGCU--------CCUGu---UGU- -5'
19124 3' -55.9 NC_004684.1 + 1136 0.66 0.734332
Target:  5'- -gACGGCCACggcAUGCCGGGcGugcCGACc -3'
miRNA:   3'- cgUGCCGGUGa--UGCGGCUC-Cu--GUUGu -5'
19124 3' -55.9 NC_004684.1 + 56487 0.66 0.734332
Target:  5'- uGCuCGGCCugUacGCGCCGAcccgGGugGuCAc -3'
miRNA:   3'- -CGuGCCGGugA--UGCGGCU----CCugUuGU- -5'
19124 3' -55.9 NC_004684.1 + 26454 0.66 0.734332
Target:  5'- uGUACGGCgGC-ACGCCu-GGccGCGACAg -3'
miRNA:   3'- -CGUGCCGgUGaUGCGGcuCC--UGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 39386 0.66 0.734332
Target:  5'- uGUACGGCCcgaucACcGCGUCGGGuGuCGGCAg -3'
miRNA:   3'- -CGUGCCGG-----UGaUGCGGCUC-CuGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 11592 0.66 0.734332
Target:  5'- aGC-CcGCCGgUGCGCCu-GGACGACGg -3'
miRNA:   3'- -CGuGcCGGUgAUGCGGcuCCUGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 25700 0.66 0.734332
Target:  5'- cGCACGccgucGCCGCgcuggguguUGCCGAGGuCGGCc -3'
miRNA:   3'- -CGUGC-----CGGUGau-------GCGGCUCCuGUUGu -5'
19124 3' -55.9 NC_004684.1 + 34046 0.66 0.734332
Target:  5'- gGCGaGGCCggACUGCaCCGAGGuggcCAGCGa -3'
miRNA:   3'- -CGUgCCGG--UGAUGcGGCUCCu---GUUGU- -5'
19124 3' -55.9 NC_004684.1 + 29546 0.66 0.734332
Target:  5'- uGCGCGGCCAUcACGCucagCGAGauGACcGCu -3'
miRNA:   3'- -CGUGCCGGUGaUGCG----GCUC--CUGuUGu -5'
19124 3' -55.9 NC_004684.1 + 57245 0.66 0.734332
Target:  5'- -aGCGGCgGCUGgcugaGCaCGAGGuCAGCGg -3'
miRNA:   3'- cgUGCCGgUGAUg----CG-GCUCCuGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 17186 0.66 0.734332
Target:  5'- gGCACcuGG-CACgACGCCGAcGGCAACGu -3'
miRNA:   3'- -CGUG--CCgGUGaUGCGGCUcCUGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 24484 0.66 0.723954
Target:  5'- aGCGC-GCUAC--CGCCGGGGGCggUg -3'
miRNA:   3'- -CGUGcCGGUGauGCGGCUCCUGuuGu -5'
19124 3' -55.9 NC_004684.1 + 26048 0.66 0.723954
Target:  5'- -gGCGGCCAggGCGgcgaguUCGAGGcCAACAc -3'
miRNA:   3'- cgUGCCGGUgaUGC------GGCUCCuGUUGU- -5'
19124 3' -55.9 NC_004684.1 + 44684 0.66 0.723954
Target:  5'- cCACGGCCuuggccacgucCUGCGCCGccGGGGCcAUg -3'
miRNA:   3'- cGUGCCGGu----------GAUGCGGC--UCCUGuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.