miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19124 5' -59 NC_004684.1 + 53398 0.66 0.575058
Target:  5'- cACCGUguccaGGUgGCCgGGCUGgccuGCGCCGCg -3'
miRNA:   3'- -UGGCA-----CCA-CGGgUUGGCgu--UGCGGUG- -5'
19124 5' -59 NC_004684.1 + 45224 0.66 0.575058
Target:  5'- cGCCGUggcccugcGGUGCUCcuCgGUGAUGCCAUg -3'
miRNA:   3'- -UGGCA--------CCACGGGuuGgCGUUGCGGUG- -5'
19124 5' -59 NC_004684.1 + 6756 0.66 0.575058
Target:  5'- aGCCGUcGGgugcacgaagUGCUCGACgGCAuCGCCGg -3'
miRNA:   3'- -UGGCA-CC----------ACGGGUUGgCGUuGCGGUg -5'
19124 5' -59 NC_004684.1 + 40534 0.66 0.575058
Target:  5'- cGCCGccuccugcucgcUGGUGCUCGACCGguccacCAGCGCg-- -3'
miRNA:   3'- -UGGC------------ACCACGGGUUGGC------GUUGCGgug -5'
19124 5' -59 NC_004684.1 + 8271 0.66 0.575058
Target:  5'- -aCGUGc-GCCgCGACCuGCGGCGCUACc -3'
miRNA:   3'- ugGCACcaCGG-GUUGG-CGUUGCGGUG- -5'
19124 5' -59 NC_004684.1 + 47688 0.66 0.571897
Target:  5'- gGCCGUcccaGGUcuuggcucggccagGCCUuGCCGCcGCGCCGg -3'
miRNA:   3'- -UGGCA----CCA--------------CGGGuUGGCGuUGCGGUg -5'
19124 5' -59 NC_004684.1 + 10253 0.66 0.564539
Target:  5'- uGCgCGUGGagcgGgCCAACCaacuggccaGCGACGCCGg -3'
miRNA:   3'- -UG-GCACCa---CgGGUUGG---------CGUUGCGGUg -5'
19124 5' -59 NC_004684.1 + 38822 0.66 0.564539
Target:  5'- cGCCuggcGGUGCCCGACgGCcugGugGCCcugGCg -3'
miRNA:   3'- -UGGca--CCACGGGUUGgCG---UugCGG---UG- -5'
19124 5' -59 NC_004684.1 + 23122 0.66 0.564539
Target:  5'- uGCacgaGUGGUGUgCcGCCGUcgacuGCGCCAUg -3'
miRNA:   3'- -UGg---CACCACGgGuUGGCGu----UGCGGUG- -5'
19124 5' -59 NC_004684.1 + 48721 0.66 0.564539
Target:  5'- uACCGUcGcGCCCAGCgGCGGCacgaugGUCACg -3'
miRNA:   3'- -UGGCAcCaCGGGUUGgCGUUG------CGGUG- -5'
19124 5' -59 NC_004684.1 + 65209 0.66 0.564539
Target:  5'- gGCCGUGcGgcaccucgcggGCCaUGACCGuCAACGCCGa -3'
miRNA:   3'- -UGGCAC-Ca----------CGG-GUUGGC-GUUGCGGUg -5'
19124 5' -59 NC_004684.1 + 32655 0.66 0.564539
Target:  5'- uGCCGguUGGcaagGCCUggcGGCgGCAugGCUACg -3'
miRNA:   3'- -UGGC--ACCa---CGGG---UUGgCGUugCGGUG- -5'
19124 5' -59 NC_004684.1 + 35468 0.66 0.56349
Target:  5'- gGCCG-GGccgcgacUGUCCGAacugCGCAACGUCGCu -3'
miRNA:   3'- -UGGCaCC-------ACGGGUUg---GCGUUGCGGUG- -5'
19124 5' -59 NC_004684.1 + 10957 0.66 0.561393
Target:  5'- gAUCGUGGUGgcggccuccuugacCCCGAgaGCAugGCC-Cg -3'
miRNA:   3'- -UGGCACCAC--------------GGGUUggCGUugCGGuG- -5'
19124 5' -59 NC_004684.1 + 1271 0.66 0.554071
Target:  5'- cGCUGgcUGGUGgCCAuguuCCGguACGCgCGCg -3'
miRNA:   3'- -UGGC--ACCACgGGUu---GGCguUGCG-GUG- -5'
19124 5' -59 NC_004684.1 + 36975 0.66 0.554071
Target:  5'- cGCCGUcgaacaGGUGUugCC-ACgGCAGCGCCGg -3'
miRNA:   3'- -UGGCA------CCACG--GGuUGgCGUUGCGGUg -5'
19124 5' -59 NC_004684.1 + 50249 0.66 0.554071
Target:  5'- -aCGacGGUGCCCAACCGU--UGCCc- -3'
miRNA:   3'- ugGCa-CCACGGGUUGGCGuuGCGGug -5'
19124 5' -59 NC_004684.1 + 6788 0.66 0.554071
Target:  5'- cGCCG-GGUGaCCGGCCuGCGcaccguGCGCgGCg -3'
miRNA:   3'- -UGGCaCCACgGGUUGG-CGU------UGCGgUG- -5'
19124 5' -59 NC_004684.1 + 48972 0.66 0.554071
Target:  5'- gGCCGccGGUGCgCCcGCCGgGcCGCCGa -3'
miRNA:   3'- -UGGCa-CCACG-GGuUGGCgUuGCGGUg -5'
19124 5' -59 NC_004684.1 + 55513 0.66 0.554071
Target:  5'- cCCG-GuGUGUUC-ACCGcCAGCGCCGCc -3'
miRNA:   3'- uGGCaC-CACGGGuUGGC-GUUGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.