miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19125 3' -55.6 NC_004684.1 + 38256 0.66 0.755973
Target:  5'- uGCGUCG-GCACcaccagcucGCAcGUGCUGGUCugGCg -3'
miRNA:   3'- -CGCGGCaCGUG---------UGUcCACGACUAG--UG- -5'
19125 3' -55.6 NC_004684.1 + 21051 0.66 0.755973
Target:  5'- --cCCGUGCACggguGCcGGUGCUGAccgggCACc -3'
miRNA:   3'- cgcGGCACGUG----UGuCCACGACUa----GUG- -5'
19125 3' -55.6 NC_004684.1 + 26573 0.66 0.755973
Target:  5'- cGCGCCcugGCGCGCGGcgguGUGCgcgGGuUCGCc -3'
miRNA:   3'- -CGCGGca-CGUGUGUC----CACGa--CU-AGUG- -5'
19125 3' -55.6 NC_004684.1 + 633 0.66 0.751875
Target:  5'- cGCGCCGaGguCGCcgGGGUGCUGuaccggguggugCGCa -3'
miRNA:   3'- -CGCGGCaCguGUG--UCCACGACua----------GUG- -5'
19125 3' -55.6 NC_004684.1 + 39806 0.66 0.745692
Target:  5'- uGCGCCGguccaUGuCGgACAGGUGCUuGGcCAUa -3'
miRNA:   3'- -CGCGGC-----AC-GUgUGUCCACGA-CUaGUG- -5'
19125 3' -55.6 NC_004684.1 + 14396 0.66 0.745692
Target:  5'- cGgGCCGUcGC-CGCAGGagaUGCUGcgCGa -3'
miRNA:   3'- -CgCGGCA-CGuGUGUCC---ACGACuaGUg -5'
19125 3' -55.6 NC_004684.1 + 53610 0.66 0.745692
Target:  5'- cGCGCUGgagGCGCAGGU--UGGUCGCc -3'
miRNA:   3'- -CGCGGCacgUGUGUCCAcgACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 5058 0.66 0.735297
Target:  5'- cGCGCUGUGCugG-AGGccuccgGCgaugaGAUCGCg -3'
miRNA:   3'- -CGCGGCACGugUgUCCa-----CGa----CUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 25202 0.66 0.735297
Target:  5'- gGCGCUG-GCAC-CGGGUGgCU--UCACc -3'
miRNA:   3'- -CGCGGCaCGUGuGUCCAC-GAcuAGUG- -5'
19125 3' -55.6 NC_004684.1 + 45885 0.66 0.7248
Target:  5'- cGCGCCGUcCACGCuGGcggcgaaacgaUGUUGGUgCGCu -3'
miRNA:   3'- -CGCGGCAcGUGUGuCC-----------ACGACUA-GUG- -5'
19125 3' -55.6 NC_004684.1 + 36042 0.66 0.7248
Target:  5'- cCGCCGUGCAgACAccGG-GCaccugGAUCAg -3'
miRNA:   3'- cGCGGCACGUgUGU--CCaCGa----CUAGUg -5'
19125 3' -55.6 NC_004684.1 + 50685 0.66 0.7248
Target:  5'- gGUGCCGUGCaaucggguaccGCGCAgugcGGUGCggagugUGAUgCGCg -3'
miRNA:   3'- -CGCGGCACG-----------UGUGU----CCACG------ACUA-GUG- -5'
19125 3' -55.6 NC_004684.1 + 6779 0.66 0.7248
Target:  5'- gGCGaCGUGCGC-CGGGUGaccggcCUGcgCACc -3'
miRNA:   3'- -CGCgGCACGUGuGUCCAC------GACuaGUG- -5'
19125 3' -55.6 NC_004684.1 + 10082 0.66 0.714213
Target:  5'- cCGUgGUGCGC-CGGGUGCUcagcCACa -3'
miRNA:   3'- cGCGgCACGUGuGUCCACGAcua-GUG- -5'
19125 3' -55.6 NC_004684.1 + 4421 0.66 0.714213
Target:  5'- cCGCCGgaacaaCGCGCGGGccUGCUGG-CGCa -3'
miRNA:   3'- cGCGGCac----GUGUGUCC--ACGACUaGUG- -5'
19125 3' -55.6 NC_004684.1 + 47404 0.66 0.714213
Target:  5'- gGCGCgGcacguuguUGCGCACcuGGUGCuccggcaccaccUGGUCGCg -3'
miRNA:   3'- -CGCGgC--------ACGUGUGu-CCACG------------ACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 63219 0.66 0.703545
Target:  5'- cCGCCGgGCGCAacCGGGccaUGAUCGCg -3'
miRNA:   3'- cGCGGCaCGUGU--GUCCacgACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 15282 0.66 0.703545
Target:  5'- uGCGCgGUGCACcuGCuGG-GcCUGGUCGa -3'
miRNA:   3'- -CGCGgCACGUG--UGuCCaC-GACUAGUg -5'
19125 3' -55.6 NC_004684.1 + 59519 0.67 0.692809
Target:  5'- cGCGUCGUaggccuGCGCACAGGUcCUGcacCGCc -3'
miRNA:   3'- -CGCGGCA------CGUGUGUCCAcGACua-GUG- -5'
19125 3' -55.6 NC_004684.1 + 34143 0.67 0.682016
Target:  5'- uCGCCGccucggGCgGCAC-GGUGCUGcUCACc -3'
miRNA:   3'- cGCGGCa-----CG-UGUGuCCACGACuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.