miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19125 3' -55.6 NC_004684.1 + 15597 0.68 0.627554
Target:  5'- cGCGCUcgGUGCGCuacCGGGUGCccGAagGCa -3'
miRNA:   3'- -CGCGG--CACGUGu--GUCCACGa-CUagUG- -5'
19125 3' -55.6 NC_004684.1 + 8174 0.7 0.499223
Target:  5'- uCGCCGgggGCGCGCuGGgccaggcgcaGCUGAUCAa -3'
miRNA:   3'- cGCGGCa--CGUGUGuCCa---------CGACUAGUg -5'
19125 3' -55.6 NC_004684.1 + 50211 0.69 0.519973
Target:  5'- gGCGUCGUGC---CAGGUGCcGAaCACg -3'
miRNA:   3'- -CGCGGCACGuguGUCCACGaCUaGUG- -5'
19125 3' -55.6 NC_004684.1 + 33296 0.69 0.530475
Target:  5'- -gGUgGUGCucGCGCGGGUggccucGCUGAUCAUg -3'
miRNA:   3'- cgCGgCACG--UGUGUCCA------CGACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 19579 0.69 0.566712
Target:  5'- gGCGUCGUGCACcuGCccaguccggcggccgAGGUGCUGG-CGg -3'
miRNA:   3'- -CGCGGCACGUG--UG---------------UCCACGACUaGUg -5'
19125 3' -55.6 NC_004684.1 + 55330 0.69 0.573177
Target:  5'- uCGCCGacgGCugGCAGGUGagcCUGG-CGCg -3'
miRNA:   3'- cGCGGCa--CGugUGUCCAC---GACUaGUG- -5'
19125 3' -55.6 NC_004684.1 + 17470 0.68 0.583991
Target:  5'- cGCGCCcUGCuCaucgaccugguGCAGGaGCUGAUUACg -3'
miRNA:   3'- -CGCGGcACGuG-----------UGUCCaCGACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 54605 0.68 0.605728
Target:  5'- cGCGCgCGUGCGCGCGuacGuGUGC-GcgCGCg -3'
miRNA:   3'- -CGCG-GCACGUGUGU---C-CACGaCuaGUG- -5'
19125 3' -55.6 NC_004684.1 + 55577 0.68 0.616634
Target:  5'- -gGCCGgggguccagGCAC-CAaggcGGUGCUGAUCAa -3'
miRNA:   3'- cgCGGCa--------CGUGuGU----CCACGACUAGUg -5'
19125 3' -55.6 NC_004684.1 + 59691 0.71 0.458893
Target:  5'- uGCGCCGagcUGCGCG-GGGUGCgGGUgCGCa -3'
miRNA:   3'- -CGCGGC---ACGUGUgUCCACGaCUA-GUG- -5'
19125 3' -55.6 NC_004684.1 + 12072 0.71 0.449082
Target:  5'- cCGCCGaGCGCgACgAGGUGCUGGcccgCGCg -3'
miRNA:   3'- cGCGGCaCGUG-UG-UCCACGACUa---GUG- -5'
19125 3' -55.6 NC_004684.1 + 65804 0.71 0.429815
Target:  5'- aUGCCGUGCACcggGCAGGUGacccgGAggCACc -3'
miRNA:   3'- cGCGGCACGUG---UGUCCACga---CUa-GUG- -5'
19125 3' -55.6 NC_004684.1 + 27854 0.88 0.033873
Target:  5'- cGCGCUGUGCACGCAGGagUGCcGGUCGCu -3'
miRNA:   3'- -CGCGGCACGUGUGUCC--ACGaCUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 41161 0.8 0.125295
Target:  5'- cGCGCCGgacccGCGCGCGggguggaacgggucGGUGCUGAUCAa -3'
miRNA:   3'- -CGCGGCa----CGUGUGU--------------CCACGACUAGUg -5'
19125 3' -55.6 NC_004684.1 + 4184 0.73 0.325233
Target:  5'- uGCGcCCGgcggGCGCGguGGUuCUGAUCACc -3'
miRNA:   3'- -CGC-GGCa---CGUGUguCCAcGACUAGUG- -5'
19125 3' -55.6 NC_004684.1 + 59401 0.73 0.341281
Target:  5'- -aGUCGcUGCACuuGCAGGUGUUGcgCACg -3'
miRNA:   3'- cgCGGC-ACGUG--UGUCCACGACuaGUG- -5'
19125 3' -55.6 NC_004684.1 + 20443 0.73 0.357894
Target:  5'- gGCGCUGUGCACGgCGGcGaagaUGCUGcgCACc -3'
miRNA:   3'- -CGCGGCACGUGU-GUC-C----ACGACuaGUG- -5'
19125 3' -55.6 NC_004684.1 + 57497 0.72 0.366411
Target:  5'- aGCGCC--GCACGCAGGUGCcugcgccgGAUCcCg -3'
miRNA:   3'- -CGCGGcaCGUGUGUCCACGa-------CUAGuG- -5'
19125 3' -55.6 NC_004684.1 + 8971 0.72 0.375066
Target:  5'- aUGCUGUGCgagccaucacgaAC-CAGGUGCUGcgCACg -3'
miRNA:   3'- cGCGGCACG------------UGuGUCCACGACuaGUG- -5'
19125 3' -55.6 NC_004684.1 + 45219 0.71 0.429815
Target:  5'- cGCGuCCaUGCgGCGCuuGGUGCUGGUCAg -3'
miRNA:   3'- -CGC-GGcACG-UGUGu-CCACGACUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.