miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19125 5' -60.1 NC_004684.1 + 65091 0.66 0.551074
Target:  5'- uGCACGGCGGucagcaccgcgucguGGCCCaGGcUGGcGGCa- -3'
miRNA:   3'- -CGUGUUGCU---------------CCGGGcCC-ACCaCCGcg -5'
19125 5' -60.1 NC_004684.1 + 62745 0.66 0.551074
Target:  5'- uGUACAcCGAGGCCauGGUGGacuugcccuccugcGGCGg -3'
miRNA:   3'- -CGUGUuGCUCCGGgcCCACCa-------------CCGCg -5'
19125 5' -60.1 NC_004684.1 + 28063 0.66 0.546993
Target:  5'- gGC-CAACc-GGCCUGGGcgcggcaacUGG-GGCGCu -3'
miRNA:   3'- -CGuGUUGcuCCGGGCCC---------ACCaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 62947 0.66 0.546993
Target:  5'- cGCGCGGCGc-GCgCCGacgaUGGUGGCGUg -3'
miRNA:   3'- -CGUGUUGCucCG-GGCcc--ACCACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 43820 0.66 0.546993
Target:  5'- cGCGCAGCGAGGUcgCCaGGUacucGUccccgcacgacaGGCGCa -3'
miRNA:   3'- -CGUGUUGCUCCG--GGcCCAc---CA------------CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 60066 0.66 0.543938
Target:  5'- uGCACAcCGAGcacgcgucggccauGgCCGGGUucGcGUGGUGCa -3'
miRNA:   3'- -CGUGUuGCUC--------------CgGGCCCA--C-CACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 295 0.66 0.540889
Target:  5'- gGCACAAgaguucgcuggccgcCGAGGCcaacgcccgcaCCGGGUac-GGCGCg -3'
miRNA:   3'- -CGUGUU---------------GCUCCG-----------GGCCCAccaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 66522 0.66 0.536832
Target:  5'- cGCcuuCAGCGcGGCCCGGcGggcacggcGGUaGGCGUu -3'
miRNA:   3'- -CGu--GUUGCuCCGGGCC-Ca-------CCA-CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 15509 0.66 0.536832
Target:  5'- -gACAAgGccGCCCGGGgccgGGCGCu -3'
miRNA:   3'- cgUGUUgCucCGGGCCCaccaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 35966 0.66 0.526737
Target:  5'- -gACAGCGAcuccacgcaGGCCUGGcGcacagucggGGUGGUGCc -3'
miRNA:   3'- cgUGUUGCU---------CCGGGCC-Ca--------CCACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 26425 0.66 0.526737
Target:  5'- -gGCAGCGGGGUUCGccgccGGUGGcccGGUGUa -3'
miRNA:   3'- cgUGUUGCUCCGGGC-----CCACCa--CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 20395 0.66 0.516715
Target:  5'- cGCGC-ACGAGGCCgaGGucagccUGGacgacuccUGGCGCa -3'
miRNA:   3'- -CGUGuUGCUCCGGg-CCc-----ACC--------ACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 52213 0.66 0.516715
Target:  5'- uGCGCAGCaccAGuCCCaGGUGcGUGGCGg -3'
miRNA:   3'- -CGUGUUGc--UCcGGGcCCAC-CACCGCg -5'
19125 5' -60.1 NC_004684.1 + 54438 0.66 0.516715
Target:  5'- cGCGuCGGCGGGaGCaCCGGG-GGUgccgacGGCGg -3'
miRNA:   3'- -CGU-GUUGCUC-CG-GGCCCaCCA------CCGCg -5'
19125 5' -60.1 NC_004684.1 + 53097 0.66 0.515716
Target:  5'- uGCGCGGCGgccugcaAGGCCacaucacgCGGGUaGGUGcCGCc -3'
miRNA:   3'- -CGUGUUGC-------UCCGG--------GCCCA-CCACcGCG- -5'
19125 5' -60.1 NC_004684.1 + 64982 0.66 0.513723
Target:  5'- cCGCGACGcGGGUCUGcGGcucgccagcggcguUGGUGGUGUg -3'
miRNA:   3'- cGUGUUGC-UCCGGGC-CC--------------ACCACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 14792 0.66 0.506769
Target:  5'- cGCACAacuACGGcGGCgcgcuguccaCCGGacuGUGG-GGCGCg -3'
miRNA:   3'- -CGUGU---UGCU-CCG----------GGCC---CACCaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 54627 0.66 0.506769
Target:  5'- uGCGCGcGCGAGGaCgGGGUGuuGUGG-GCg -3'
miRNA:   3'- -CGUGU-UGCUCCgGgCCCAC--CACCgCG- -5'
19125 5' -60.1 NC_004684.1 + 23695 0.66 0.505779
Target:  5'- cCAgAGCGuGGCCUccaaccuGGGcGGcGGCGCg -3'
miRNA:   3'- cGUgUUGCuCCGGG-------CCCaCCaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 20330 0.67 0.500842
Target:  5'- -gGCAAUG-GGCcgggcaugucggccuCCGGGUGG-GGCGg -3'
miRNA:   3'- cgUGUUGCuCCG---------------GGCCCACCaCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.