miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19125 5' -60.1 NC_004684.1 + 44906 0.67 0.496907
Target:  5'- gGCACGuugGCGucgguGcGCgCCGGGUagucGGUGGCGa -3'
miRNA:   3'- -CGUGU---UGCu----C-CG-GGCCCA----CCACCGCg -5'
19125 5' -60.1 NC_004684.1 + 16016 0.67 0.496907
Target:  5'- -gACGACGgccaAGGCCUcaccucGGUGGacugGGCGCa -3'
miRNA:   3'- cgUGUUGC----UCCGGGc-----CCACCa---CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 34971 0.67 0.48131
Target:  5'- gGCGCAACGAcacgccccuggagcaGGCcgugcugauCCGGGUGacgcGUgcGGCGCg -3'
miRNA:   3'- -CGUGUUGCU---------------CCG---------GGCCCAC----CA--CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 4036 0.67 0.480343
Target:  5'- gGCAUGGCGAcgguggccuaccGGCcaucgccgggugaCCGGGUGGUGGgacugucgaagcucuCGCg -3'
miRNA:   3'- -CGUGUUGCU------------CCG-------------GGCCCACCACC---------------GCG- -5'
19125 5' -60.1 NC_004684.1 + 59862 0.67 0.480343
Target:  5'- cCACGGCGGccaggucGGUCCGGGcaGGUccaccccgaugcggcGGCGCa -3'
miRNA:   3'- cGUGUUGCU-------CCGGGCCCa-CCA---------------CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 26535 0.67 0.477448
Target:  5'- cGCGCcugGGCGgucAGGCCgGGGUGuacgcGUuccGGCGCg -3'
miRNA:   3'- -CGUG---UUGC---UCCGGgCCCAC-----CA---CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 64696 0.67 0.477448
Target:  5'- gGCAcCGGCcAGGCCgGGGaugcGGUgcccGGCGCu -3'
miRNA:   3'- -CGU-GUUGcUCCGGgCCCa---CCA----CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 43496 0.67 0.476485
Target:  5'- gGCGCAGCGGcagcaggugcagcGGCaggggCGGGagcGGUGGCuGCg -3'
miRNA:   3'- -CGUGUUGCU-------------CCGg----GCCCa--CCACCG-CG- -5'
19125 5' -60.1 NC_004684.1 + 55651 0.67 0.46786
Target:  5'- cGUGCGugGAGGa--GGGccUGGcGGCGCa -3'
miRNA:   3'- -CGUGUugCUCCgggCCC--ACCaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 63912 0.67 0.458373
Target:  5'- cCACggUGcGGCCCGGcGUGGcugagcuugGGCGa -3'
miRNA:   3'- cGUGuuGCuCCGGGCC-CACCa--------CCGCg -5'
19125 5' -60.1 NC_004684.1 + 6173 0.67 0.455546
Target:  5'- cGUGCGGCGguAGGCaCCGGGcagguacaugucgaUGGccuccGGCGCg -3'
miRNA:   3'- -CGUGUUGC--UCCG-GGCCC--------------ACCa----CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 58603 0.67 0.448989
Target:  5'- uGCGCGGugcuuugauCGAcGGCCCGuGGcGGcUGGUGCc -3'
miRNA:   3'- -CGUGUU---------GCU-CCGGGC-CCaCC-ACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 20213 0.67 0.448989
Target:  5'- uGCGCA--GAGccuuucGCCUGGGUGcGccUGGCGCg -3'
miRNA:   3'- -CGUGUugCUC------CGGGCCCAC-C--ACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 9339 0.67 0.448989
Target:  5'- -gACGAgGAGGCCuCcGGUGcGUcccGGCGCg -3'
miRNA:   3'- cgUGUUgCUCCGG-GcCCAC-CA---CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 47925 0.67 0.448989
Target:  5'- gGCGCAugucgcGCGGGccaccgccGCCCGGGcaugGGCGCa -3'
miRNA:   3'- -CGUGU------UGCUC--------CGGGCCCaccaCCGCG- -5'
19125 5' -60.1 NC_004684.1 + 50799 0.67 0.448056
Target:  5'- uGCGCAacaugaagucgucGCGcuuGGCCCagcGGGUcaggaacuccGGUGGCGUc -3'
miRNA:   3'- -CGUGU-------------UGCu--CCGGG---CCCA----------CCACCGCG- -5'
19125 5' -60.1 NC_004684.1 + 53229 0.68 0.439712
Target:  5'- aGCACcaccACGuGGCaCGGGUaGGUgaucccGGCGCg -3'
miRNA:   3'- -CGUGu---UGCuCCGgGCCCA-CCA------CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 7748 0.68 0.43879
Target:  5'- cGCGCAugGGGGaccugaCCGGGccgacccccaccgUGGUcgagcauuGGUGCg -3'
miRNA:   3'- -CGUGUugCUCCg-----GGCCC-------------ACCA--------CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 17427 0.68 0.43695
Target:  5'- uGCACAGCGAcGGCgggcauuucuacuuCCGGGUGcccgacGGUGUg -3'
miRNA:   3'- -CGUGUUGCU-CCG--------------GGCCCACca----CCGCG- -5'
19125 5' -60.1 NC_004684.1 + 28092 0.68 0.430546
Target:  5'- cGCGCGACcc-GCaCCGGGUGGU-GCGg -3'
miRNA:   3'- -CGUGUUGcucCG-GGCCCACCAcCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.